| Sequence ID | dm3.chrX |
|---|---|
| Location | 902,947 – 903,049 |
| Length | 102 |
| Max. P | 0.552679 |
| Location | 902,947 – 903,049 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.53 |
| Shannon entropy | 0.44748 |
| G+C content | 0.61399 |
| Mean single sequence MFE | -38.94 |
| Consensus MFE | -25.78 |
| Energy contribution | -27.18 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 902947 102 + 22422827 CCUCUGCAUUCCCAUUCCCGAUGGAGCCUU--GGCGUCAUUUCGGCGACGGCGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAAAACUCCAGGACUCUAGGA (((..(((.((((((.((((....((((..--(.((((........)))).)))))...)))).)))))).)))((((.((.........)).))))...))). ( -40.20, z-score = -0.92, R) >droAna3.scaffold_12929 675743 82 + 3277472 -UGUUGGACUGGAGAACCCGAGGGCACUUUUAGGCGUCAGAUGGACUGC----GUUGAGUGGGCGAGGGACUGCGUCUGGGUAUCCU----------------- -.........(((..(((((....(((((..(.(((((.....))).))----.).)))))((((........))))))))).))).----------------- ( -23.60, z-score = 0.85, R) >droYak2.chrX 825489 96 + 21770863 CCUCUGCACUCCCAUUCCCGAUGGAGCCUU--GUCGCCAUUUCGGCGACGGUGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCAGGGCU------ .....(((.((((((.((((....((((((--((((((.....)))))))).))))...)))).)))))).))).....(((((.........)))))------ ( -48.60, z-score = -3.34, R) >droSec1.super_10 746011 101 + 3036183 CCUCUGCAUUCCCAUUCCCGAUGGAGCCUU--GGCGUCAUUUCGGCGGCGGCGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCAG-ACUCUAUGA .....(((.((((((.((((....((((((--(.((((.....)))).))).))))...)))).)))))).)))((((.((.........))))-))....... ( -40.30, z-score = -0.82, R) >droSim1.chrX_random 846472 102 + 5698898 CCUCUGCAUUCCCAUUCCCGAUGGAGCCUU--GGCGUCAUUUCGGCGGCGGCGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCGGGACUCUAUGA .....(((.((((((.((((....((((((--(.((((.....)))).))).))))...)))).)))))).))).(((((((((.(....).))).).))).)) ( -42.00, z-score = -0.68, R) >consensus CCUCUGCAUUCCCAUUCCCGAUGGAGCCUU__GGCGUCAUUUCGGCGGCGGCGGCUAAGUGGGCGUGGGACUGCGUCUAGGCCCAGAACUCCAGGACUCUA_GA (((.((((.((((((.((((....((((....(.((((.....)))).)...))))...)))).)))))).))))...)))....................... (-25.78 = -27.18 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:37 2011