| Sequence ID | dm3.chrX |
|---|---|
| Location | 902,692 – 902,811 |
| Length | 119 |
| Max. P | 0.641162 |
| Location | 902,692 – 902,811 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.38 |
| Shannon entropy | 0.34849 |
| G+C content | 0.30283 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -13.92 |
| Energy contribution | -16.11 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 902692 119 + 22422827 CUAUUUAUGUUCAGGGCGAAAAUUAUCUCCAAUUACUG-GUAUUUACAGGACUAUAAAUAUAAUUUUGUCCAAUUUGGAGACUUUUCAAAUCAUUUUUUCGCUUUGGAAAUUGUCAAAUA .........(((((((((((((...(((((((....((-.......))((((...............))))...)))))))..............)))))))))))))............ ( -25.49, z-score = -2.67, R) >droYak2.chrX 825263 92 + 21770863 UUAUUUGUAUUC-GGGCAGAAAUUAGCUCCAAUUACUG--UGUGUACA-------------------------UUUGGACACUUUUCAAAUCACUUUGUCGCUUUUAAAAUCAUUAAAUA .((..((((..(-(.((((.((((......)))).)))--).))))))-------------------------..))((((...............)))).................... ( -10.06, z-score = 0.85, R) >droSec1.super_10 745751 117 + 3036183 CUAUUUAGGUUCAGGGCGAAAAUUAUAUCCAAUUACUGUAUGUGUACAGGACUAUAAAUAUAAUUUUGUCCAAUUUGGAGACUU--CAAAUCAUUUUGUCGCUUUGAAA-UCGUCAAAUA .............((((.((((((((((.......(((((....)))))........)))))))))))))).(((((..((.((--((((.(........).)))))).-))..))))). ( -26.16, z-score = -2.34, R) >droSim1.chrX_random 846210 118 + 5698898 CUAUUUAUGUCCAGGGCGAAAAUUAUCUCCAAUUACUGUAUGUGUACAGGACUAUAAAUAUAAUUUUGUCCAAUUUGGAGACUU--CAAAUCAUUUUGUCGCUUUGAAAAUCGUCAAAUA ...........((((((((......(((((((....((((....))))((((...............))))...)))))))...--((((....)))))))))))).............. ( -25.96, z-score = -2.40, R) >consensus CUAUUUAUGUUCAGGGCGAAAAUUAUCUCCAAUUACUG_AUGUGUACAGGACUAUAAAUAUAAUUUUGUCCAAUUUGGAGACUU__CAAAUCAUUUUGUCGCUUUGAAAAUCGUCAAAUA .........((((((((((......(((((((.(((.......)))..((((...............))))...))))))).....((((....))))))))))))))............ (-13.92 = -16.11 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:37 2011