| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,508,593 – 9,508,691 |
| Length | 98 |
| Max. P | 0.569290 |
| Location | 9,508,593 – 9,508,691 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.36 |
| Shannon entropy | 0.40969 |
| G+C content | 0.43596 |
| Mean single sequence MFE | -18.36 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.04 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9508593 98 - 23011544 UGUGCUCGUGUGUGGCGGGCAAAA-AUUAAGCCUUCUUGCCAAACGGGCAAACAAUAAGCCAUAACCCAAUGAAAGACCAAAACCAAAUAAAACAAAAA ..(((((((...((((((((....-.....))))....)))).)))))))................................................. ( -20.90, z-score = -0.73, R) >droEre2.scaffold_4929 10110765 81 - 26641161 -GUGCUCGUGUGUGGCAGGCAAAGUGUUAAGCCUUUUACCAAAACGAGCGAGCAAUAAGCCAUAGCCCAAUGAAAGCCCAAA----------------- -..((((((...(((.((((..........))))....)))..))))))(.((.....))).....................----------------- ( -18.70, z-score = -0.31, R) >droYak2.chr2L 12180725 80 - 22324452 -GUGCUCGUGUGUGGCAAGCAAAUCUCUGAGCCUU-UUACCAAACGAGCAAACAAUAAACCAUAGAGCAAUAAAACCCCGAA----------------- -.((((((((((.(((...((......)).)))..-.)))...)))))))................................----------------- ( -14.90, z-score = -1.12, R) >droSec1.super_3 4955240 95 - 7220098 -GUGCUCGUGUGUGGCGGGCAAAA-AUUAAGCCUU-UUACCAAACGAGCAAACAAUAAGCCAUAACCCAAUGAAAGCCCAAACCCAAAACCGAAAAAA- -.(((((((..((((.((((....-.....)))).-))))...)))))))................................................- ( -19.10, z-score = -1.32, R) >droSim1.chr2L 9279962 95 - 22036055 -GUGCUCGUGUGUGGCGGGCAAAA-AUUAAGCCUU-UUACCAAACGGGCAAACAAUAAGCCAUAACCCAAUGAAAGCCCAAAACCAAAACUGAAAAAA- -.(((((((..((((.((((....-.....)))).-))))...)))))))................................................- ( -18.20, z-score = 0.18, R) >consensus _GUGCUCGUGUGUGGCGGGCAAAA_AUUAAGCCUU_UUACCAAACGAGCAAACAAUAAGCCAUAACCCAAUGAAAGCCCAAA_CCAAA____A_AAAA_ ..(((((((...(((.((((..........)))).....))).)))))))................................................. (-15.28 = -15.04 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:28 2011