| Sequence ID | dm3.chrX |
|---|---|
| Location | 887,302 – 887,422 |
| Length | 120 |
| Max. P | 0.556286 |
| Location | 887,302 – 887,422 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.08 |
| Shannon entropy | 0.32355 |
| G+C content | 0.31800 |
| Mean single sequence MFE | -21.61 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.34 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 887302 120 - 22422827 ACUACGUUGCAAAUACAUCUUGGUUUAAUGCGAGCAAGCAAAUAAAAAUUGAAAACGUUUAAUUUAAUUGAUUAAGCGUGAAAUCGUCAAAUUAAACUAAUGUGAUUGCAAACCGAAAUG ....((((((((.(((((..(((((((((((......)).........((((..((((((((((.....)))))))))).......)))))))))))))))))).))))))..))..... ( -29.50, z-score = -3.61, R) >droSim1.chrX 723457 120 - 17042790 ACUGCGUUGCACAUAAAUCUUGGUUUAAUGCGAGCAAGCUAAUAAAAACUGAAAACGUUUAAUUUAAUUGAUUGAGCUGACCAUCGUCAAAUACAACUAAUUUGAUUGCAAACCGAAAUG ..(((.(((((..(((((....))))).)))))))).((.................((((((((.....))))))))........(((((((.......))))))).))........... ( -20.00, z-score = -0.38, R) >droSec1.super_10 730240 120 - 3036183 ACUGCGAUGCACAUAAAUCUUGGUUUAAUGCGAGCAAGCUAAUAAAAACUGAAAACGUUUAAUUGAAUUGAUUGAGCUGACCAUCGUCAAAUACAACUAAUUUGAUUGCAAACCGAAAUG .....(((........)))((((((...(((((.((((..................((((((((.....))))))))((((....))))...........)))).))))))))))).... ( -20.20, z-score = -0.64, R) >droYak2.chrX 807679 100 - 21770863 -------------------UUGGUUUUAUGCGUGCAAACAAA-AAAAAUGAGAAACGUUUAAUUUCAUUGAUUAAGCUGACCAUCUUCAAAUAUAACUAAUUUGAUUGCAAACCGAAAUG -------------------((((((.......(((((.((((-.............((((((((.....))))))))(((......)))...........)))).))))))))))).... ( -16.11, z-score = -1.01, R) >droEre2.scaffold_4644 863801 120 - 2521924 ACUGCAUUGCAAAUAAAUCUUGGUUUAAUGCGUGCGAGCAAAUAAAAAUGUGUAACGCUUAAUUUAAUUGAUUAAGCUGACCAUCGACAAAUAAAACUAAUUCGAUUGCAAACCGAAAUG ..(((((.(((..(((((....))))).)))))))).((((.......((.((...((((((((.....))))))))..))))((((..............))))))))........... ( -22.24, z-score = -1.08, R) >consensus ACUGCGUUGCAAAUAAAUCUUGGUUUAAUGCGAGCAAGCAAAUAAAAAUUGAAAACGUUUAAUUUAAUUGAUUAAGCUGACCAUCGUCAAAUAAAACUAAUUUGAUUGCAAACCGAAAUG ...................((((((...(((((.((((..................((((((((.....))))))))((((....))))...........)))).))))))))))).... (-15.74 = -16.34 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:34 2011