| Sequence ID | dm3.chrX |
|---|---|
| Location | 869,445 – 869,546 |
| Length | 101 |
| Max. P | 0.982223 |
| Location | 869,445 – 869,546 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.45907 |
| G+C content | 0.42127 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -14.31 |
| Energy contribution | -12.87 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 869445 101 + 22422827 UCUUGUUUGCCCCAAAACAAUGCCC--------GAAUU------UUGGUGCUAAAACUGUUAGACAAAUUACUCCAGUGAUUAUGAUGACGCUGCUC-UGACCUGAGCAGCCAACA ..((((((......)))))).((((--------((...------)))).)).......((((..((((((((....)))))).)).))))(((((((-......)))))))..... ( -26.50, z-score = -3.41, R) >droAna3.scaffold_12929 637140 98 + 3277472 UUUUGUUUUC---AAGACAAUGGUU--------GAAUU------UCUG-GUUGAAACUAUUAGACAAAUUACCGUUGCGAUUAUUUCAGUUUUGGUUGUAAUCGAGGUAAAUGGCA (((((....)---))))(((((((.--------.....------((((-((.......))))))......)))))))(((((((.((......))..)))))))............ ( -17.90, z-score = -0.03, R) >droEre2.scaffold_4644 843540 104 + 2521924 -UUUGUUUGCCC-AAAACAAUGACCAAAUGAGCGAAUU------UUGGUGCUAAAACUGUUAGACAAAUUAUCCCAGUG---AUGAUGACGCUGCUC-CGACCUGAGCAGCAAACA -.((((((....-.))))))..((((((.........)------))))).........(((......((((((.....)---)))))...(((((((-......))))))).))). ( -24.00, z-score = -2.01, R) >droYak2.chrX 786896 110 + 21770863 -UUUGUUUGCCC-AAAACAAUGCCCGAAUUUCGGUGUUCGGUGUUCGGUGCCCAAACUGUUAGACAAAUUACUUUAGUG---AUUAUGACGCUGCUC-UGACCUGAGCAGCAAACA -.((((((....-.)))))).((((((((.(((.....))).)))))).)).......((((....((((((....)))---))).))))(((((((-......)))))))..... ( -34.30, z-score = -3.03, R) >droSim1.chrX 703896 97 + 17042790 -UUUGUUUGGCCCAAAACAAUGCCC--------GAAUU------UCGGUGCCAAAACUGUUAGACAAAUUACUCCAGUG---AUUAUGACGCUGCUC-UGACCUGAGCAGCCAACA -.((((((......)))))).((((--------(....------.))).)).......((((....((((((....)))---))).))))(((((((-......)))))))..... ( -27.60, z-score = -3.09, R) >droSec1.super_10 710508 97 + 3036183 -UUUGUUUGGCCCAAAACAAUGUCC--------GUAUU------UCGGUGCCAAAACUGUUAGACAAAUUACUCCAGUG---AUUAUGACGCUGCUC-UGACCUGAGCAGCCAACA -....(((((((((((((.......--------)).))------).)).))))))...((((....((((((....)))---))).))))(((((((-......)))))))..... ( -27.30, z-score = -2.75, R) >consensus _UUUGUUUGCCC_AAAACAAUGCCC________GAAUU______UCGGUGCCAAAACUGUUAGACAAAUUACUCCAGUG___AUUAUGACGCUGCUC_UGACCUGAGCAGCCAACA ..((((((......))))))......................................((((.......(((....))).......))))(((((((.......)))))))..... (-14.31 = -12.87 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:33 2011