| Sequence ID | dm3.chrX |
|---|---|
| Location | 865,571 – 865,639 |
| Length | 68 |
| Max. P | 0.563134 |
| Location | 865,571 – 865,639 |
|---|---|
| Length | 68 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 64.93 |
| Shannon entropy | 0.53228 |
| G+C content | 0.47682 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -7.57 |
| Energy contribution | -7.95 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 865571 68 + 22422827 AUUCACA---UAGGCAUUGAAAUUUCAAUACAGGGUAACUUAUGGUCGAGUCCUUCGUCCUGCUCUGCCAG .......---..((((((((....)))))..((((((......((.((((...)))).))))))))))).. ( -15.40, z-score = -1.33, R) >droSec1.super_10 706695 69 + 3036183 AUUCACUGCUUAGACCUUGAAAUUUCAA--CAGGGUAACUUAUGGUCGAGUCCUUCGGCCUGCUCUUCCCG .......((....((((((.........--)))))).......(((((((...))))))).))........ ( -14.50, z-score = -0.68, R) >droYak2.chrX 782978 52 + 21770863 -----------------UAGAAUUUCAU--UAGGGAAACCGAUGGUCGAGUCUAUCGGCUUGCUCCUCUUG -----------------...........--..((....))((.((.((((((....))))))..))))... ( -13.80, z-score = -1.32, R) >droEre2.scaffold_4644 839961 57 + 2521924 ------------GGUACUAGCAUUUCCA--CGGGGUAACUGCUGGUCGAGUCUAUCGGCUUGCUCUUCUUG ------------...(((((((.((((.--...)).)).)))))))((((((....))))))......... ( -14.70, z-score = -0.98, R) >consensus ____________GGCAUUAAAAUUUCAA__CAGGGUAACUGAUGGUCGAGUCCAUCGGCCUGCUCUUCCUG ...............................((((((......((((((.....))))))))))))..... ( -7.57 = -7.95 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:32 2011