| Sequence ID | dm3.chrX |
|---|---|
| Location | 863,955 – 864,013 |
| Length | 58 |
| Max. P | 0.693634 |
| Location | 863,955 – 864,013 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 86.35 |
| Shannon entropy | 0.21761 |
| G+C content | 0.25738 |
| Mean single sequence MFE | -8.85 |
| Consensus MFE | -6.90 |
| Energy contribution | -6.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 863955 58 - 22422827 --AGGAAAAUUAAUUUUUCUCAUUCUGCGAAUUGUAUUUUUGUUCCAUUUCGUUUAAUUC --.((((((.....)))))).(((..(((((.((...........)).)))))..))).. ( -6.40, z-score = -0.88, R) >droEre2.scaffold_4644 839083 59 - 2521924 -AGGGAAAAUUAAUUUUCCUCAUUCUGCGAAUAUUAUUUUUGUUCCAUUUCGUUUAAUUU -.(((((((....))))))).....((.(((((.......)))))))............. ( -7.80, z-score = -1.12, R) >droPer1.super_11 956484 60 + 2846995 AGGAGAAAAUUAAUUUUUCUCAUUUGGCGAAUAUUAUUUUCGUUCCAUUUCGUUUCAUUA ..(((((((.....)))))))...(((((((.......))))..)))............. ( -10.60, z-score = -2.29, R) >dp4.chrXL_group1a 3847222 60 + 9151740 AGGAGAAAAUUAAUUUUUCUCAUUUGGCGAAUAUUAUUUUCGUUCCAUUUCAUUUCAUUA ..(((((((.....)))))))...(((((((.......))))..)))............. ( -10.60, z-score = -2.71, R) >consensus _GGAGAAAAUUAAUUUUUCUCAUUCGGCGAAUAUUAUUUUCGUUCCAUUUCGUUUAAUUA ..(((((((.....))))))).....(((((.......)))))................. ( -6.90 = -6.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:31 2011