Locus 12552

Sequence ID dm3.chrX
Location 857,088 – 857,204
Length 116
Max. P 0.852010
window17264

overview

Window 4

Location 857,088 – 857,204
Length 116
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 86.61
Shannon entropy 0.21529
G+C content 0.37716
Mean single sequence MFE -23.60
Consensus MFE -16.21
Energy contribution -18.02
Covariance contribution 1.81
Combinations/Pair 1.05
Mean z-score -2.39
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.92
SVM RNA-class probability 0.852010
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 857088 116 - 22422827
CAUAUUGGCAAACAAUAUACAAUAAAUACAGACAGUUUAAAAAAUAUGAAUUCAGGCUAAAAUGCCUGCAAACAUGAGUAG--CCACUCACUAUGUGUGAAACAGCCAAUAAACACCC
..(((((((........(((..(((((.......))))).....((((....(((((......)))))....)))).))).--....((((.....))))....)))))))....... ( -24.60, z-score =  -2.92, R)
>droSim1.chrX 691945 116 - 17042790
CUUAUCGGCAAACAAUAUACAAUAAAUACAGACAGUUAGAAAAACAUGAAUUCAGGCUAAAAUGCCUGCAAACAUGAGUAG--CCACUCACUAUGUGUGAAACAGCCAAUAAACACCC
.((((.(((...................................((((....(((((......)))))....)))).....--....((((.....))))....))).))))...... ( -22.20, z-score =  -2.21, R)
>droSec1.super_10 698594 116 - 3036183
CUUAUCGGCAAACAAUAUACAAUAAAUACAGACAGUUAGAAAAACAUGAAUUCACGCUAAAAUGCCUGCAAACAUGAGUAG--CCACUCACUAUGUGCGAAACAGCCAAUAAACACCC
.((((.(((.......................(((((.....))).))..(((..((......))..(((....(((((..--..))))).....))))))...))).))))...... ( -16.50, z-score =  -0.85, R)
>droYak2.chrX 775022 116 - 21770863
CUUAUUGGCAAGCCAUGUACCAUAAAUACAAGUUGUUUCAAGAACAUAAAUUCAGGC--AAAUGCCUACAAACAUGAGCAGGCGCACUCACCAUGAGUAAAGCAGCCAAUAAACGUCC
.((((((((..(((((((...............(((((...))))).......((((--....))))....))))).))..((..((((.....))))...)).))))))))...... ( -31.10, z-score =  -3.60, R)
>consensus
CUUAUCGGCAAACAAUAUACAAUAAAUACAGACAGUUAGAAAAACAUGAAUUCAGGCUAAAAUGCCUGCAAACAUGAGUAG__CCACUCACUAUGUGUGAAACAGCCAAUAAACACCC
.((((((((...................................((((....(((((......)))))....))))...........((((.....))))....))))))))...... (-16.21 = -18.02 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:29 2011