| Sequence ID | dm3.chrX |
|---|---|
| Location | 855,681 – 855,782 |
| Length | 101 |
| Max. P | 0.611553 |
| Location | 855,681 – 855,782 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 86.70 |
| Shannon entropy | 0.25475 |
| G+C content | 0.50325 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -19.71 |
| Energy contribution | -19.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 855681 101 - 22422827 ACCCCGUCUCGCAUUUGUGGGACACCCG-GCACUACAUUAUGGAAUUUCCUUUGUACUUUAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAG-ACGGUG ...(((((((...((((.(((((((...-.(((((((....((.....))..)))......((((.....)))).))))..))))))).)))))))-)))).. ( -36.00, z-score = -3.23, R) >droSim1.chrX 690494 101 - 17042790 ACCCCGUCUCGCAUUUGUGGGACAGCCG-GCACUACAUUAUGGAAUUUCCUUUGUACUUCAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAG-ACGGUG ...(((((((...((((.((((((....-....((((....((.....))..))))(((((((((.....)))...)))))))))))).)))))))-)))).. ( -34.60, z-score = -2.52, R) >droSec1.super_10 697153 101 - 3036183 ACCCCGUCUCGCAUUUGUGGGACAGCCG-GCACUACAUUAUGGAAUUUCCUUUGUACUUCAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAG-ACGGUG ...(((((((...((((.((((((....-....((((....((.....))..))))(((((((((.....)))...)))))))))))).)))))))-)))).. ( -34.60, z-score = -2.52, R) >droYak2.chrX 773523 101 - 21770863 ACCCCGUCUCGCAUUUGUGGGACAGGCG-GCACUACAUUAUGGAAUUUCCUUUGUACUUCAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAGCGCCGU- ..((.(((((((....))))))).))((-((.(((.....)))...((((((.((((((((((((.....)))...))))))))....).)))))).)))).- ( -32.60, z-score = -1.71, R) >droEre2.scaffold_4644 831031 101 - 2521924 ACCUCGUCUCGCAUUUGUGGGACAGCCG-GCACUACAUUAUGGAAUUUCCUUUGUACUUCAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAGCGCCGU- .(((((((((((....)))))))....(-(((((.((((..((.....))...........((((.....)))).)))).))))))....))))........- ( -31.60, z-score = -1.83, R) >dp4.chrXL_group1a 3813845 95 + 9151740 UCCCCAUCCCCUGGGCA-GCAGCAUCCAUGCAGAACGUUAUGGAAUUUCCUUUGUUCUUCUUUCCAAUCAGGAAGAGUGAAAUGUUCCCCGAGGUG------- .........((((((.(-(((...((((((........))))))......((..((((((((.......))))))))..)).)))).))).)))..------- ( -25.50, z-score = -1.19, R) >consensus ACCCCGUCUCGCAUUUGUGGGACAGCCG_GCACUACAUUAUGGAAUUUCCUUUGUACUUCAUUCCAAUCAGGAAAAGUGAAGUGUCCCCCGAGGAG_ACGGU_ .....(((((...((((.((((((.........((((....((.....))..))))(((((((((.....)))...)))))))))))).))))))).)).... (-19.71 = -19.93 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:26 2011