| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,503,871 – 9,503,971 |
| Length | 100 |
| Max. P | 0.906081 |
| Location | 9,503,871 – 9,503,971 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.36149 |
| G+C content | 0.63500 |
| Mean single sequence MFE | -42.31 |
| Consensus MFE | -32.68 |
| Energy contribution | -35.43 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.906081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9503871 100 + 23011544 ---CGGGGACACACUGUCAUCGGGAAUUCCGAAUGCCAGUGCCAGCUCGGCCACCACCAGCCUGAUGAUGACAACGUCUACGGGUCUGGGCGGUGUGGCCAUG ---..(((...(((((.((((((.....))).))).)))))....)))(((((((.((((((((..((((....))))..)))).))))...).))))))... ( -43.40, z-score = -1.78, R) >droSim1.chr2L 9275521 100 + 22036055 ---CGGGGACACACUGUCAUCGGGAAUCCCGAAUGCCAGUGUCAGCUCCGCCACCACCAGCCUGAUGAUGACGACGUCUACGGGUCUGGGCGGGGUGGCCAUG ---.((((..((((((.(((((((...)))).))).))))))...))))((((((.((((((((..((((....))))..)))).))))....)))))).... ( -49.90, z-score = -2.98, R) >droSec1.super_3 4950532 100 + 7220098 ---CGGGGACACACUGUCAUCGGGAAUUCCGAAUGCCAGUGUCAGCUCCGCCACCACCAGCCUGAUGAUGACGACGUCUACGGGUCUGGGCGGGGUGGCCAUG ---.((((..((((((.((((((.....))).))).))))))...))))((((((.((((((((..((((....))))..)))).))))....)))))).... ( -47.90, z-score = -2.74, R) >droYak2.chr2L 12171871 100 + 22324452 ---CGGGGAUACACUGUCAUCGGGUAUUCCGAAUGCCAGUGUCGGCUCCGCCACCACCAGCCUGAUGAUGACAACGUCCACGGGUCUGGGCGGUGUGACAAUG ---(((((..((((((.((((((.....))).))).))))))...))))).((((.((((((((..((((....))))..)))).))))..))))........ ( -41.70, z-score = -1.55, R) >droEre2.scaffold_4929 10106296 100 + 26641161 ---CGGGGAUACACUGUCAUCGGGUGUUCCGAAUGCCAGUGUCAGCUCCGCCACCACCAGCCUGAUGAUGACCACGUCUACGGGUCUGGGCGGUGUGGCCCUG ---.((((..((((((.((((((.....))).))).))))))...))))(((((.(((.((((......((((.((....)))))).)))))))))))).... ( -45.10, z-score = -1.71, R) >droAna3.scaffold_12943 872412 100 + 5039921 CGGCGACAACCCACCACAACCGUCGACCCUGCCCCUGCCCCAUGCCUCUGCCACCACCAGCCUGAUGAUGACCACGCCCGCGGGCCUGGGAGGAGUAGCU--- .((((((..............)))).))((((.(((..((((.(((........((.((......)).))....((....))))).))))))).))))..--- ( -25.84, z-score = 1.08, R) >consensus ___CGGGGACACACUGUCAUCGGGAAUUCCGAAUGCCAGUGUCAGCUCCGCCACCACCAGCCUGAUGAUGACAACGUCUACGGGUCUGGGCGGUGUGGCCAUG ....((((..((((((.((((((.....))).))).))))))...))))((((((.((((((((..((((....))))..)))).))))...).))))).... (-32.68 = -35.43 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:27 2011