Locus 12549

Sequence ID dm3.chrX
Location 855,447 – 855,542
Length 95
Max. P 0.743074
window17258 window17259

overview

Window 8

Location 855,447 – 855,542
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 97.89
Shannon entropy 0.02900
G+C content 0.51930
Mean single sequence MFE -24.87
Consensus MFE -22.65
Energy contribution -22.43
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.631368
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 855447 95 + 22422827
CCACCCGACCGACAGAGGCCACACGCUCCUCUGUUCCAUGUUCCUCUGCUCAGCUCUGGCCAAAAACUUUAAUUUGGUUAAGCAAACAUUGGUGG
(((((.....((((((((..(((.((......))....))).)))))).)).(((.((((((((........))))))))))).......))))) ( -28.00, z-score =  -2.41, R)
>droSim1.chrX 690260 95 + 17042790
CCACCCGACCGACCGAGGCCACACGCUCCUCUGUUCCAUGUUCCUCUGCUCUGCUCUGGCCAAAAACUUUAAUUUGGUUAAGCAAACAUUGGUGG
(((((.....(((.((((..(((.((......))....))).)))).).))((((.((((((((........))))))))))))......))))) ( -23.50, z-score =  -1.22, R)
>droSec1.super_10 696919 95 + 3036183
CCACCCGACCGAUCGAGGCCACACGCUCCUCUGUUCCAUGUUCCUCUGCUCUGCUCUGGCCAAAAACUUUAAUUUGGUUAAGCAAACAUUGGUGG
(((((.........((((..(((.((......))....))).)))).....((((.((((((((........))))))))))))......))))) ( -23.10, z-score =  -1.21, R)
>consensus
CCACCCGACCGACCGAGGCCACACGCUCCUCUGUUCCAUGUUCCUCUGCUCUGCUCUGGCCAAAAACUUUAAUUUGGUUAAGCAAACAUUGGUGG
(((((.....(((.((((..(((.((......))....))).)))).).)).(((.((((((((........))))))))))).......))))) (-22.65 = -22.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 855,447 – 855,542
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 97.89
Shannon entropy 0.02900
G+C content 0.51930
Mean single sequence MFE -30.43
Consensus MFE -29.43
Energy contribution -29.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.56
SVM RNA-class probability 0.743074
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 855447 95 - 22422827
CCACCAAUGUUUGCUUAACCAAAUUAAAGUUUUUGGCCAGAGCUGAGCAGAGGAACAUGGAACAGAGGAGCGUGUGGCCUCUGUCGGUCGGGUGG
(((((.............(((((........)))))...((.((((.((((((.(((((...........)))))..)))))))))))).))))) ( -31.30, z-score =  -1.30, R)
>droSim1.chrX 690260 95 - 17042790
CCACCAAUGUUUGCUUAACCAAAUUAAAGUUUUUGGCCAGAGCAGAGCAGAGGAACAUGGAACAGAGGAGCGUGUGGCCUCGGUCGGUCGGGUGG
(((((..(((((((((..(((((........)))))...))))))).))((((.(((((...........)))))..)))).........))))) ( -30.00, z-score =  -1.18, R)
>droSec1.super_10 696919 95 - 3036183
CCACCAAUGUUUGCUUAACCAAAUUAAAGUUUUUGGCCAGAGCAGAGCAGAGGAACAUGGAACAGAGGAGCGUGUGGCCUCGAUCGGUCGGGUGG
(((((..(((((((((..(((((........)))))...))))))).))((((.(((((...........)))))..)))).........))))) ( -30.00, z-score =  -1.51, R)
>consensus
CCACCAAUGUUUGCUUAACCAAAUUAAAGUUUUUGGCCAGAGCAGAGCAGAGGAACAUGGAACAGAGGAGCGUGUGGCCUCGGUCGGUCGGGUGG
(((((..(((((((((..(((((........)))))...)))).)))))((((.(((((...........)))))..)))).........))))) (-29.43 = -29.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:25 2011