| Sequence ID | dm3.chrX |
|---|---|
| Location | 853,248 – 853,351 |
| Length | 103 |
| Max. P | 0.994043 |
| Location | 853,248 – 853,351 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 93.85 |
| Shannon entropy | 0.08671 |
| G+C content | 0.33010 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -20.59 |
| Energy contribution | -20.15 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.994043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 853248 103 - 22422827 CAAACCGAGAUACCCCAUAUCCGAUAGAUAGAGAUAGAUAUAGCUAUGGCUAUAUCUAUAUCUAUAGAGUUGGCCAAGUAAAGAAUUCAACAAAUAUAUGCAU ....................(((((..(((((.(((((((((((....))))))))))).)))))...))))).............................. ( -23.90, z-score = -3.03, R) >droSim1.chrX 687903 103 - 17042790 CAAACCGAGAUACCCCAUAUCCGAUAGAUAGAGAUAGAUAUAGCUAUGGCUAUUUCUAUAUCUGUAGAGUUGACCAAACAAAAAAUUCAACGAAUAUAUCUAU .....((.((((.....))))))(((((((((.(((((.(((((....))))).))))).))......(((((.............))))).....))))))) ( -22.32, z-score = -3.54, R) >droSec1.super_10 694593 103 - 3036183 CAAACCGAGAUACCCCAUAUCCGAUAGAUAGAGAUAGAUAUAGCUAUGGCUAUUUCUAUAUCUGUAGAGUUGGCCAAACAAAAAAUUCAACAAAUAUAUAUAU ....................(((((..(((((.(((((.(((((....))))).))))).)))))...))))).............................. ( -20.00, z-score = -2.47, R) >consensus CAAACCGAGAUACCCCAUAUCCGAUAGAUAGAGAUAGAUAUAGCUAUGGCUAUUUCUAUAUCUGUAGAGUUGGCCAAACAAAAAAUUCAACAAAUAUAUAUAU .....((.((((.....))))))....(((((.(((((.(((((....))))).))))).)))))...(((((.............)))))............ (-20.59 = -20.15 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:21 2011