| Sequence ID | dm3.chrX |
|---|---|
| Location | 846,175 – 846,225 |
| Length | 50 |
| Max. P | 0.982978 |
| Location | 846,175 – 846,225 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 93.00 |
| Shannon entropy | 0.11358 |
| G+C content | 0.47000 |
| Mean single sequence MFE | -12.33 |
| Consensus MFE | -10.34 |
| Energy contribution | -10.40 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.982978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 846175 50 + 22422827 GAAUUUUCGCGGUGGUGACCCCGCGAACUAACCCUUUAAUCCAUUAACUU .....(((((((.(....).)))))))....................... ( -14.30, z-score = -3.76, R) >droSim1.chrX 680709 50 + 17042790 GAAUUUUCGCGGUGGUGACCCCGCGAACUAACCCUUUAAUCCAUUAACUU .....(((((((.(....).)))))))....................... ( -14.30, z-score = -3.76, R) >droSec1.super_10 682811 50 + 3036183 GAAUUUUCGCGGUGGUGACCCCGCGAACUAACCCUUUAAUCCAUUAACUU .....(((((((.(....).)))))))....................... ( -14.30, z-score = -3.76, R) >droYak2.chrX 762603 50 + 21770863 UCAUUUUCCUGGCGGUGACCCCGCGAACUCACCCUUUAAUCCAUUAACCU .....(((.(((.(....).))).)))....................... ( -6.40, z-score = -0.50, R) >consensus GAAUUUUCGCGGUGGUGACCCCGCGAACUAACCCUUUAAUCCAUUAACUU .....(((((((.((...)))))))))....................... (-10.34 = -10.40 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:18 2011