| Sequence ID | dm3.chrX |
|---|---|
| Location | 829,916 – 829,989 |
| Length | 73 |
| Max. P | 0.770770 |
| Location | 829,916 – 829,989 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 64.11 |
| Shannon entropy | 0.60682 |
| G+C content | 0.59040 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -11.84 |
| Energy contribution | -13.90 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 829916 73 - 22422827 UGGUGUCGUGCUCGGGCGAAUACC-CUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUUUGGUCAAGAUG .((((((((......))).)))))-(((.(((((((....))))))).)))...(((((.....)))))..... ( -28.60, z-score = -2.04, R) >droAna3.scaffold_12929 587653 62 - 3277472 -----UCCUGGCACUGUCACUGACCCGGUUCGGUCCUCUUGGCCC-------AAUCUUCACUGUAUUGGAGAUG -----...(((....((((..((((......))))....))))))-------)(((((((......))))))). ( -13.80, z-score = 0.45, R) >droEre2.scaffold_4644 799635 74 - 2521924 UGCGGUCGCGUCAGGGGAAGUCCCACUUUGGGCGCCUCCUGGCGCUGCGAGGAGUAGCUACUGUGCUCAAGAUG ....(((((((((((((..((((......))))..))))))))))......(((((.(....))))))..))). ( -30.60, z-score = -0.81, R) >droSim1.chrX 4412989 73 + 17042790 UGGUGUCGUGCUCGGGCAAAUCCC-CUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUAUGCUCAAGAUG (((((((..(((((((.....)))-(((.(((((((....))))))).)))))))))).))))........... ( -29.00, z-score = -2.55, R) >consensus UGGUGUCGUGCCAGGGCAAAUCCC_CUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUGUGCUCAAGAUG ....(((..................(((.(((((((....))))))).)))((((((.....))))))..))). (-11.84 = -13.90 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:17 2011