| Sequence ID | dm3.chrX |
|---|---|
| Location | 826,535 – 826,642 |
| Length | 107 |
| Max. P | 0.797594 |
| Location | 826,535 – 826,642 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.35 |
| Shannon entropy | 0.50547 |
| G+C content | 0.58516 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -24.87 |
| Energy contribution | -24.23 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 826535 107 - 22422827 UCCGACCCGAUAAGCCCAGUCCGAGGAGGUGGGGCCGAAAAGUGGGUUUAGACGGUG-GCGGCUUAUCGAGUGGC-GAUAAGCGGGACACAAG-ACCCACUUCCCCACAC (((...(.(((.......))).).))).((((((.....((((((((((.....(((-.(.((((((((.....)-))))))).)..))).))-)))))))))))))).. ( -42.40, z-score = -1.71, R) >droSec1.super_10 663350 107 - 3036183 UCCGACCCGAUAAGCCCAGUCCGAGGGGGUGGGGCCG-AAAGUGGGUUUAAACGGUGAGCGGCUUAUCGGGUGGC-GAUAAGCGGCACAUAAG-ACCCACUUCCCCACAC ..............(((........)))((((((...-.((((((((((.....(((.((.((((((((.....)-))))))).)).))).))-)))))))))))))).. ( -46.70, z-score = -2.32, R) >droYak2.chrX 742445 102 - 21770863 UCCCAUGCGAUAAGCCCCGUCCAAGGAGGUGGGGCUG-CAAGUGGGUUUAACU-----GCGGCUUAUCGGGUGGC-GAUAAGCGGCCACCGAG-ACCCAUUUCCCCACAC .....(((....(((((((.((.....))))))))))-))(((((((((....-----((.((((((((.....)-))))))).)).....))-)))))))......... ( -43.10, z-score = -1.87, R) >droEre2.scaffold_4644 796281 101 - 2521924 UCCGAUUCGAUAAGCCCAGUCCGAGGGGGUGGGGCCG-AAAGUGGGUUUAACU-----GCAGCUUAUCGGGUGGC-GAUAAGUGGCCA-CAAG-GCCCAUUUCCCCACAC ..............(((........)))((((((...-.((((((((((....-----((.((((((((.....)-))))))).))..-..))-)))))))))))))).. ( -38.70, z-score = -1.04, R) >droAna3.scaffold_12929 584062 106 - 3277472 CCCGCCCCUCAUAGGUUACUCC---GGGGUUUAUCUUACAGGUGGUAUUAGUAUAGA-GUAGCUUAUCGACGGACGGAUGAUAAGCGACCGGGCUUCCAGUUCCCCACAU .(((.((.(((((((((((((.---......((((........))))........))-))))))))).)).)).))).............(((..........))).... ( -25.76, z-score = 1.49, R) >consensus UCCGACCCGAUAAGCCCAGUCCGAGGGGGUGGGGCCG_AAAGUGGGUUUAAAC_____GCGGCUUAUCGGGUGGC_GAUAAGCGGCAAACAAG_ACCCACUUCCCCACAC .............((((...((.....))..))))....((((((((...........((.(((((((........))))))).))........))))))))........ (-24.87 = -24.23 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:15 2011