| Sequence ID | dm3.chrX |
|---|---|
| Location | 821,157 – 821,249 |
| Length | 92 |
| Max. P | 0.613289 |
| Location | 821,157 – 821,249 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.20 |
| Shannon entropy | 0.40777 |
| G+C content | 0.60740 |
| Mean single sequence MFE | -38.45 |
| Consensus MFE | -27.37 |
| Energy contribution | -29.57 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 821157 92 + 22422827 -------UGCUGAUUGGCAGCUGCCAUACAAGCGGGGCAAUAAAGGAUCCCGGCAGGAGUGCUGCCACCGCUGAUGUUGGCUAAUCCUCUGUCCCUGUC------------ -------.(((...((((....))))....)))((((((....(((((.((((((..((((.......))))..))))))...))))).))))))....------------ ( -34.60, z-score = -0.94, R) >droSim1.chrX 659463 92 + 17042790 -------UGCUGAUUGGCAGCUGCCAUACAGGCGGGGCAAUAGAGGAUCCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCUGUCCCUGUC------------ -------..(((..((((....))))..)))((((((..(((((((((.(((((((.((((.......)))).)))))))...))))))))))))))).------------ ( -44.10, z-score = -2.54, R) >droSec1.super_10 657606 92 + 3036183 -------UGCUGAUUGGCAGCUGCCAUACAGGCGGGGCAAUAGAGGAUUCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCUGUCCCUGUC------------ -------..(((..((((....))))..)))((((((..(((((((((((((((((.((((.......)))).)))))))..)))))))))))))))).------------ ( -45.10, z-score = -3.01, R) >droYak2.chrX 737204 104 + 21770863 -------UGCUGAUUGGCAGCUGCCACACACGCGGGGCAAUAGAGAAUUCCGGCAGGAGUGCUGCCUCCACUGCUGUUGGCCAAUCCUCUGUCUCUCUCUCUGUCCCUGUC -------.((((..((((....))))..)).))((((((((((((.((((((((((.((((.......)))).)))))))..))).)))))).........)))))).... ( -37.20, z-score = -0.96, R) >droEre2.scaffold_4644 789961 92 + 2521924 -------UGCUGAUUGGCAGCUGCCACACAGGCGGGGCAAUAGAGAAUUUCGGCAGGAGUGCUGGCUCCACUGCUGUUGGCCAGUCCUCUGUCCCUGUC------------ -------..(((..((((....))))..)))((((((..((((((.((((((((((.((((.......)))).)))))))..))).)))))))))))).------------ ( -36.00, z-score = -0.23, R) >droAna3.scaffold_12929 579017 93 + 3277472 CUGGCCCUGACUGCCGGAGGCUGCCACACAGGCGGGGCAAUAGAUAACGCCUGCGGGUGUACUGCCGCCACUGGAGGUGCCUCGAUCCUCGCC------------------ .((((.......))))(((((.(((.((..((((((((..........))))((((.....))))))))..))..))))))))..........------------------ ( -33.70, z-score = 1.22, R) >consensus _______UGCUGAUUGGCAGCUGCCACACAGGCGGGGCAAUAGAGAAUUCCGGCAGGAGUGCUGCCACCACUGCUGUUGGCUAAUCCUCUGUCCCUGUC____________ ........(((...((((....))))....)))((((((...((((((((((((((.((((.......)))).)))))))..)))))))))))))................ (-27.37 = -29.57 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:14 2011