| Sequence ID | dm3.chrX |
|---|---|
| Location | 812,374 – 812,464 |
| Length | 90 |
| Max. P | 0.582626 |
| Location | 812,374 – 812,464 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Shannon entropy | 0.36643 |
| G+C content | 0.51361 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -23.93 |
| Energy contribution | -23.12 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 812374 90 + 22422827 ------GCAGCAGCAAGCUGGAUGGUG-------AGUGGCAUGUUUUCAUGUUUUUCCUUCUGCGUACACAGAGAGAAAGGGCG---------GAGGGUGUCCUU---CCAUCAA ------.((((.....))))(((((.(-------((.(((((.((((..(.((((((..((((......)))))))))).)..)---------))).))))))))---))))).. ( -29.50, z-score = -0.89, R) >droYak2.chrX 728339 115 + 21770863 GCAGCAGCGACUGCAAGCUGGGUGGUGGGUGGUGAGUGGCAUGUUUUCGUGUUUUUCUUUCUGCGUACACAGAGAGAAACGUCGCCUCACAUUGCAUAGGAUAUCUCUCCAUCUG ((((((((........))))....(((((((..(...((((((....))))))((((((((((......)))))))))))..)))).))).))))...(((......)))..... ( -38.10, z-score = -0.81, R) >droSec1.super_10 647351 99 + 3036183 GCAGCAGCGAGUGCAAGCCGGGUGGUG-------AGUGGCAUGUUUUCAUGUUUUUCUUUCUGCGUGCACAGAGAGAAAUGGCG---------GAGGGAGCCAUUUAACCAUCAA ...(((.....)))......(((((((-------((((((...(((((.((((((((((((((......)))))))))).))))---------))))).))))))).)))))).. ( -35.20, z-score = -1.76, R) >droSim1.chrX 649142 99 + 17042790 GCAGCAGCGAGUGCAAGCCGGGUGGUG-------AGUGGCAUGUUUUCAUGUUUUUCUUUCUGCGUGCACAGAGAGAAAUGGCG---------GAGGGAGCCAUUUAACCAUCAA ...(((.....)))......(((((((-------((((((...(((((.((((((((((((((......)))))))))).))))---------))))).))))))).)))))).. ( -35.20, z-score = -1.76, R) >consensus GCAGCAGCGACUGCAAGCCGGGUGGUG_______AGUGGCAUGUUUUCAUGUUUUUCUUUCUGCGUACACAGAGAGAAAUGGCG_________GAGGGAGCCAUUUAACCAUCAA ......((........))..(((((............((((((....))))))((((((((((......))))))))))((((................)))).....))))).. (-23.93 = -23.12 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:11 2011