| Sequence ID | dm3.chrX |
|---|---|
| Location | 809,017 – 809,133 |
| Length | 116 |
| Max. P | 0.994221 |
| Location | 809,017 – 809,133 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.23682 |
| G+C content | 0.55563 |
| Mean single sequence MFE | -42.32 |
| Consensus MFE | -33.88 |
| Energy contribution | -34.68 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 809017 116 + 22422827 UAUUUCCCUGGCUCUCCACAAAGGGAAUUGCGCUGCAGGCAGGUGAAGGCUUAAGUCUUACUCAAGGGGUUGGGCAGAGCAGCUGGUAAAGCCGGGGGAAAUCCGGUCAAAAGGGC ..(((((((((((.(((......))).(((((((((((((........))))..((((.(((.....))).))))...)))))..))))))))))))))).(((........))). ( -41.90, z-score = -0.96, R) >droEre2.scaffold_4644 778108 106 + 2521924 UAUUUCACUGGCUUUCCACAAAGGGAAUUGCGCUGCAGGCAGGCGAAGGCUUAAGUCAUACUCAAGGGGUUGGGAAGAGCAGCUGGGAAAGCCGGUCGAAAGGGGG---------- ..(((((((((((((((.(((......))).(((((.(((((((....))))..)))...(((((....)))))....)))))..))))))))))).)))).....---------- ( -40.80, z-score = -3.47, R) >droYak2.chrX 724937 106 + 21770863 UAUUUCCCUGGCUCUCCACAAAGGGAAUUGCGCUGCAGGCAGGCGAAGGCUUAAGUCGAACUUAAGGGGUUGGGAAGGGCAGCUGGGAAAUCCUUUCGAAAGGGGG---------- .(((((((..(((((((.(((......((((.(((....)))))))...((((((.....))))))...))))).)))))....))))))).((..(....)..))---------- ( -37.70, z-score = -0.93, R) >droSec1.super_10 643920 114 + 3036183 UAUUUCCCUGGCUUUCCACAAAGGGAAUUGCGCUGCAGGCAGGCGAAGGCUUAAGUCUUACUCAAGGGGUUGGGCAGAGCAGCUGGGAAAGCCCGGGAAAAGCGGGGAAAGCGG-- ..((((((.((((((((.(((......))).(((((....((((....))))..((((.(((.....))).))))...)))))..)))))))).)))))).((.......))..-- ( -46.40, z-score = -2.05, R) >droSim1.chrX 645759 105 + 17042790 UAUUUCCCUGGCUUUCCACAAAGGGAAUUGCGCUGCAGGCAGGCGAAGGCUUAAGUCUUACUCAAGGGGUUGGGCAGAGCAGCUGGGAAAGCCCGGGAAAAGCGG----------- ..((((((.((((((((.(((......))).(((((....((((....))))..((((.(((.....))).))))...)))))..)))))))).)))))).....----------- ( -44.80, z-score = -2.49, R) >consensus UAUUUCCCUGGCUUUCCACAAAGGGAAUUGCGCUGCAGGCAGGCGAAGGCUUAAGUCUUACUCAAGGGGUUGGGCAGAGCAGCUGGGAAAGCCCGGGGAAAGCGGG__________ ..((((((.((((((((.(((......))).(((((.(((((((....))))..)))...(((((....)))))....)))))..)))))))).))))))................ (-33.88 = -34.68 + 0.80)
| Location | 809,017 – 809,133 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.23682 |
| G+C content | 0.55563 |
| Mean single sequence MFE | -35.28 |
| Consensus MFE | -29.37 |
| Energy contribution | -29.49 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.994221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 809017 116 - 22422827 GCCCUUUUGACCGGAUUUCCCCCGGCUUUACCAGCUGCUCUGCCCAACCCCUUGAGUAAGACUUAAGCCUUCACCUGCCUGCAGCGCAAUUCCCUUUGUGGAGAGCCAGGGAAAUA ..((........))(((((((..((((((.((.(((((...((.......((((((.....)))))).........))..)))))((((......)))))))))))).))))))). ( -37.09, z-score = -2.73, R) >droEre2.scaffold_4644 778108 106 - 2521924 ----------CCCCCUUUCGACCGGCUUUCCCAGCUGCUCUUCCCAACCCCUUGAGUAUGACUUAAGCCUUCGCCUGCCUGCAGCGCAAUUCCCUUUGUGGAAAGCCAGUGAAAUA ----------.....((((.((.((((((((..(((((............((((((.....)))))).............)))))((((......)))))))))))).)))))).. ( -32.01, z-score = -4.17, R) >droYak2.chrX 724937 106 - 21770863 ----------CCCCCUUUCGAAAGGAUUUCCCAGCUGCCCUUCCCAACCCCUUAAGUUCGACUUAAGCCUUCGCCUGCCUGCAGCGCAAUUCCCUUUGUGGAGAGCCAGGGAAAUA ----------...((((....))))(((((((.(((....(((((((...((((((.....)))))).....(((((....))).))........))).)))))))..))))))). ( -28.30, z-score = -1.39, R) >droSec1.super_10 643920 114 - 3036183 --CCGCUUUCCCCGCUUUUCCCGGGCUUUCCCAGCUGCUCUGCCCAACCCCUUGAGUAAGACUUAAGCCUUCGCCUGCCUGCAGCGCAAUUCCCUUUGUGGAAAGCCAGGGAAAUA --..((.......)).((((((.((((((((..(((((...((.......((((((.....)))))).........))..)))))((((......)))))))))))).)))))).. ( -39.69, z-score = -3.11, R) >droSim1.chrX 645759 105 - 17042790 -----------CCGCUUUUCCCGGGCUUUCCCAGCUGCUCUGCCCAACCCCUUGAGUAAGACUUAAGCCUUCGCCUGCCUGCAGCGCAAUUCCCUUUGUGGAAAGCCAGGGAAAUA -----------.....((((((.((((((((..(((((...((.......((((((.....)))))).........))..)))))((((......)))))))))))).)))))).. ( -39.29, z-score = -3.37, R) >consensus __________CCCGCUUUCCCCCGGCUUUCCCAGCUGCUCUGCCCAACCCCUUGAGUAAGACUUAAGCCUUCGCCUGCCUGCAGCGCAAUUCCCUUUGUGGAAAGCCAGGGAAAUA ...............((((((..((((((((..(((((............((((((.....)))))).............)))))((((......)))))))))))).)))))).. (-29.37 = -29.49 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:10 2011