| Sequence ID | dm3.chrX |
|---|---|
| Location | 804,005 – 804,104 |
| Length | 99 |
| Max. P | 0.840703 |
| Location | 804,005 – 804,104 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 71.75 |
| Shannon entropy | 0.49555 |
| G+C content | 0.56247 |
| Mean single sequence MFE | -33.52 |
| Consensus MFE | -16.76 |
| Energy contribution | -18.68 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 804005 99 - 22422827 CCUUGGUUGGAUGACUCUUUGAUUGCUGCAGCUUUUGCACCUGCUGCCGGACACACGGACUGAAAACCAGAUAGCAGGUGGGAAAGCGGGGAAAACGAG------- (((((((..((......))..)))......((((((.((((((((((((......))).(((.....))).))))))))).))))))))))........------- ( -35.50, z-score = -2.88, R) >droSec1.super_10 637983 98 - 3036183 CCCUGGCUGGAUGACUCUUUGAUUGCUGCAGCUUUUGCAUCUGCUGCCGGACACACGGACUGAAAACCAGAUAGCAGGUGGGAAAGC-GGGAAAACGGG------- (((.(((.(((....)))......)))...((((((.((((((((((((......))).(((.....))).))))))))).))))))-)))........------- ( -34.30, z-score = -2.15, R) >droEre2.scaffold_4644 773122 106 - 2521924 CCGUGGCUGGAUGACUCUUUGAUUGCUGCAGCUUUUGCACCUGCUGUCCGACACACGGACUGAAAACCCGAUAGCAGGUGGGAAGGCGGGAAAGCCGGAAAGCGGG ((((..((((....(((..((.......))((((((.(((((((((((((.....)))))((......))..)))))))).)))))))))....))))...)))). ( -42.00, z-score = -2.40, R) >droYak2.chrX 721333 98 - 21770863 CCUUGACUGGAUGACUCUUUGAUUGCUGCAGCUCUUGCACCUGCUGCCGGACACACGGACUGAAGCCCAGAUAGCAGGUGGGAAAGUGGGAAAGCGGG-------- ((......))............(((((...(((.((.((((((((((((......))).(((.....))).))))))))).)).))).....))))).-------- ( -31.40, z-score = -0.35, R) >droAna3.scaffold_12929 555080 79 - 3277472 CUUCAACUCGAUGACUCCUUGAUUGCAGCUCUACUUGCACCUGCCGCAGGACACA--GGCGGCCAGGCUAAGGAUAUGGGG------------------------- ......(((.(((..((((((..(((((......)))))((((((((.(....).--.)))).)))).))))))))).)))------------------------- ( -24.40, z-score = -0.74, R) >consensus CCUUGGCUGGAUGACUCUUUGAUUGCUGCAGCUUUUGCACCUGCUGCCGGACACACGGACUGAAAACCAGAUAGCAGGUGGGAAAGCGGGAAAAACGG________ ..............................((((((.((((((((((((......))).(((.....))).))))))))).))))))................... (-16.76 = -18.68 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:08 2011