| Sequence ID | dm3.chrX |
|---|---|
| Location | 796,530 – 796,614 |
| Length | 84 |
| Max. P | 0.913523 |
| Location | 796,530 – 796,614 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 96.83 |
| Shannon entropy | 0.05698 |
| G+C content | 0.44927 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 796530 84 + 22422827 AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUACGCCGAAAGGAUAUACACUUGACACACAC ....((((((.((.(((((.....((((......))))......)))))))))....((....)).......))))........ ( -21.50, z-score = -2.44, R) >droAna3.scaffold_12929 547870 83 + 3277472 AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUAUGCCAAAAGGAUAUACACUUGACACA-AC ....((((((.((.(((((.....((((......))))......)))))))))((((((....)).))))..)))).....-.. ( -18.70, z-score = -1.67, R) >droYak2.chrX 715208 84 + 21770863 AAAACAAGGCGGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUACGCCGAAAGGAUAUACACUUGACACACAC ....(((((((..((((((.....((((......))))......)))))))))....((....)).......))))........ ( -23.40, z-score = -3.14, R) >droVir3.scaffold_12726 952362 84 - 2840439 AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUUCGCCAAAAGGAUAUACACUUGACACACAC .......(((.((((((.((((....)).(((((........))))).)))))))))))..(((........)))......... ( -18.30, z-score = -1.13, R) >droMoj3.scaffold_6473 6609668 84 + 16943266 AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGUUUCGCCAAAAGGAUAUACACUUGACACACAC ....((((...((.(((((.....((((......))))......)))))))((....((....))....)).))))........ ( -18.30, z-score = -1.16, R) >droGri2.scaffold_15203 11179796 84 - 11997470 AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUUUGCCAAAAGGAUAUACACUUGACACACAC ....((((((.((.(((((.....((((......))))......)))))))))))))((....))................... ( -19.30, z-score = -1.45, R) >consensus AAAACAAGGCCGAAGUGCAGGAAAUGUCAGCGUUGACAAGAAAAUGCACUCGCUACGCCAAAAGGAUAUACACUUGACACACAC ....((((((.((.(((((.....((((......))))......)))))))))....((....)).......))))........ (-18.82 = -18.68 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:07 2011