| Sequence ID | dm3.chrX |
|---|---|
| Location | 786,543 – 786,655 |
| Length | 112 |
| Max. P | 0.570450 |
| Location | 786,543 – 786,655 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.68 |
| Shannon entropy | 0.24687 |
| G+C content | 0.43124 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -18.96 |
| Energy contribution | -19.65 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 786543 112 - 22422827 CGUGACCUCCGCAUCUUGCGGUGGCAUCAUAGGGUUAAAUCAGGGUGUUUUGUCUGUGGCAUUAGAUUUCUUCUCCAUUGACACAAAACACUCAAGUUUAGCAAAAAAUUAA .((((((.((((.....)))).))..))))...(((((((..((((((((((((.((((....(((.....))))))).))))..))))))))..))))))).......... ( -36.10, z-score = -4.03, R) >droEre2.scaffold_4644 748140 96 - 2521924 CGUGACCUUCGCAUCUGGCGGUGGCACUAUAGGGUUAAAUCAGGGUGUUUUGGC---------------CUUCUACAUCGACGAAAAAUAUUCAAUUUCGGC-AAACAUUAA .(((.((.((((.....)))).)))))...(((((((((.(.....).))))))---------------))).........(((((.........)))))..-......... ( -19.80, z-score = 0.13, R) >droSec1.super_10 622449 109 - 3036183 CGUGACCUCCGCAUCUUGCGGUGGCAUCAUAGGGUUAAAUCAGGGUGUUUUGUCUGU--CAUUAGAUUCCUUCUCCAUUGACACAAAACCCUC-AGUUCAGCAAAACAUUAA .((((((.((((.....)))).))..))))...(((.(((..(((.(((((((..((--((..(((.....)))....)))))))))))))).-.))).))).......... ( -29.30, z-score = -2.15, R) >droSim1.chrX 632098 110 - 17042790 CGUGACCUCCGCAUCUUGCGGUGGCAUCAUAGGGUUAAAUCAGGGUGUUUUGUCUGU--CAUUAGAUUCCUUCUCCAUUGACACAAAACCCUCAAGUUCAGCAAAACAUUAA .((((((.((((.....)))).))..))))...(((.(((..(((.(((((((..((--((..(((.....)))....))))))))))).)))..))).))).......... ( -27.80, z-score = -1.69, R) >consensus CGUGACCUCCGCAUCUUGCGGUGGCAUCAUAGGGUUAAAUCAGGGUGUUUUGUCUGU__CAUUAGAUUCCUUCUCCAUUGACACAAAACACUCAAGUUCAGCAAAACAUUAA .(((.((.((((.....)))).)))))......(((.(((..((((((((((((((......)))).....((......))..))))))))))..))).))).......... (-18.96 = -19.65 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:06 2011