| Sequence ID | dm3.chrX |
|---|---|
| Location | 777,080 – 777,171 |
| Length | 91 |
| Max. P | 0.881600 |
| Location | 777,080 – 777,171 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 90.71 |
| Shannon entropy | 0.15206 |
| G+C content | 0.54293 |
| Mean single sequence MFE | -30.77 |
| Consensus MFE | -24.22 |
| Energy contribution | -24.46 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 777080 91 + 22422827 GCGAUGCAACAGCAUCAGAAGCAACAGCAGCAAAAGAGUCGCCAUGUAAGGGCGAUUUGGGAUGAAGGGAGCGCUGA----------GGUUUUAGCAGGGU (((((((....))))).(((((..((((.......((((((((.......))))))))........(....))))).----------.))))).))..... ( -30.10, z-score = -3.23, R) >droSim1.chrX 623688 100 + 17042790 GCGAUGCAACAGCAUCAGAAGCAACAGCAGCAAAAGAGUCGCCAUGUAAGGGCGAUUUGGGAUGAAGGGAGCGCUGGUUUUCAAGG-GGUUUUGGCAGGGU (((((((....))))).(((((..(..((.(....((((((((.......))))))))..).))..(..(((....)))..)..).-.))))).))..... ( -29.40, z-score = -1.63, R) >droSec1.super_10 613770 100 + 3036183 GCGAUGCAACAGCAUCAGAAGCAACAGCAGCAAAAGAGUCGCCAUGUAAGGGCGAUUUGGGAUGAAGGGAGCGCUGGUUUCCAAGG-GGUUUUGGCAGGGU (((((((....))))).(((((..(..((.(....((((((((.......))))))))..).))..((((((....))))))..).-.))))).))..... ( -32.00, z-score = -2.00, R) >droEre2.scaffold_4644 739869 101 + 2521924 GCGAUGCAACAGCAUCAGAAGCAACAGCAGCAAAAGAGUCGCCAUGUAAGGGCGAUUUGGGGGGCAGGGAGCGGUGGUUUUCAGGGGGGUUUUAGCCGGGU (((((((....))))).(((((..(....((....((((((((.......)))))))).....)).(..(((....)))..)...)..))))).))..... ( -31.60, z-score = -2.36, R) >consensus GCGAUGCAACAGCAUCAGAAGCAACAGCAGCAAAAGAGUCGCCAUGUAAGGGCGAUUUGGGAUGAAGGGAGCGCUGGUUUUCAAGG_GGUUUUAGCAGGGU (((((((....))))).(((((..((((.......((((((((.......))))))))........(....)))))............))))).))..... (-24.22 = -24.46 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:03 2011