| Sequence ID | dm3.chrX |
|---|---|
| Location | 761,704 – 761,823 |
| Length | 119 |
| Max. P | 0.513066 |
| Location | 761,704 – 761,823 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 69.90 |
| Shannon entropy | 0.49701 |
| G+C content | 0.55030 |
| Mean single sequence MFE | -36.76 |
| Consensus MFE | -18.84 |
| Energy contribution | -21.04 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 761704 119 + 22422827 UCCUGGGCAAGAUGGGAAUGGAAAACGAGUGGCAGCAGUAGAAGCAGCACCCUGUGCGAUAUGGCUGCCACACAACGUGUUGCACACGUCC--ACGAAAGAGGCAGGAGGUUAAAGUUAGC- (((((.((((.(((....((.....)).((((((((.(((...((((....))))....))).))))))))....))).))))......((--.(....).))))))).............- ( -39.40, z-score = -1.54, R) >droAna3.scaffold_12929 511115 97 + 3277472 UCCUGGACGAGACUG---UAUGAGGCACCUUGCUGU----------------------AUGUGGCUGCCACAUAACGUGUUGCACACGUUCUAACAAAAAAGGGGGGUUACCCGGGUCAGUC .....(((..((((.---.........((((..(((----------------------((((((...))))))((((((.....))))))...)))...))))(((....))).)))).))) ( -28.50, z-score = 0.23, R) >droEre2.scaffold_4644 723191 100 + 2521924 UCCUGGCCAAGAUGGGAAUGGAAAACGAGUGGCAGCA------------------GCACCUUGGCUGCCACACAACGUGUUGCACACGUCC--AGGAGAGGGGCAGGAGGUGAAAGCCUG-- (((((.((....(((.............((((((((.------------------........))))))))...(((((.....)))))))--)......)).)))))(((....)))..-- ( -40.80, z-score = -2.21, R) >droSec1.super_10 598553 99 + 3036183 UCCUGGCCAAGAUGGGGAUGGAAA-CGAGUGUGUGU-------------------GCGACGUGGCUGCCACACAACGUGUUGCACACGUCC--ACGAAAGAGGCAGGAGGUUAAAGUCAGA- (((((.((.......(((((....-)......((((-------------------(((((((((...))))((...)))))))))))))))--.(....).))))))).............- ( -34.40, z-score = -1.16, R) >droSim1.chrX_random 822894 118 + 5698898 UCCUGGCCAAGAUGG-AAUGGAAAACGAGUGGCAGCAGUAGAAGCAGCACCCUGUGCGAUGUGGCUGCCACACAACGUGUUGCACACGUCC--ACGAAAGAGGCAGGAGGUUAAAGUCAGA- (((((.((.......-..((((......((((((((..((...((((....))))....))..))))))))....((((.....)))))))--)(....).))))))).............- ( -40.70, z-score = -1.59, R) >consensus UCCUGGCCAAGAUGGGAAUGGAAAACGAGUGGCAGCA__________________GCGAUGUGGCUGCCACACAACGUGUUGCACACGUCC__ACGAAAGAGGCAGGAGGUUAAAGUCAGA_ (((((.((....................((((((((.......((((....))))........))))))))...(((((.....)))))............))))))).............. (-18.84 = -21.04 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:03 2011