| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,497,971 – 9,498,074 |
| Length | 103 |
| Max. P | 0.947606 |
| Location | 9,497,971 – 9,498,074 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 63.33 |
| Shannon entropy | 0.65822 |
| G+C content | 0.32010 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.52 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9497971 103 - 23011544 ----CAAUCUCAAACAACUGCUA-------AGUGGUUGGCUUAAUAACUUUGAUGAUUGCGUGCACACAUGUUGUGUGACUAGUAUUUAGGCUAAACAAUCAUUAAUUAGCUGA---------- ----..........((((..(..-------.)..))))(((........((((((((((.((.(((((.....)))))))((((......))))..))))))))))..)))...---------- ( -24.70, z-score = -1.09, R) >droSim1.chr2L 9267296 103 - 22036055 ----CAAUCUCAAACAAGAGCUA-------AGUGUUUGGCUUAAUAGCUAUGAUGAUUGCAUGCACACAUGUUGUGUGACUACUAUUUAGGCUAAACAAUCAUUAAUUAGCUGA---------- ----.............((((((-------(....)))))))..(((((((((((((((....(((((.....))))).(((.....)))......)))))))))..)))))).---------- ( -26.40, z-score = -1.49, R) >droSec1.super_3 4944773 95 - 7220098 ----CAAUCUCAAACAAGAGCUA-------AGUGUUUGGCUU--------UGAUGAUUGCAUGCAUACAUGUUGUGUGACUACUAUUUAGGCUAAACAAUGAUUAAUUAGCUGA---------- ----..............(((((-------(.((((((((((--------.((((...(((((((.......)))))).)...)))).))))))))))........))))))..---------- ( -23.40, z-score = -1.38, R) >droYak2.chr2L 12166152 109 - 22324452 UAUACUCGUAUAAACAACAGCUA-----UGAGUGUUUGACUUAAUAACUUUGAUUAUUGCAUGCACACAUGUUGUGUGCCUAUUAUUUAGGCUAAACAACCAUUAAUUGGAUGA---------- .............(((.((((.(-----((.((((.((...((((.......))))...)).)))).))))))))))(((((.....)))))....((.(((.....))).)).---------- ( -24.10, z-score = -1.49, R) >droEre2.scaffold_4929 10101188 83 - 26641161 -------------------------------UUUUUUGGCUUAAUAACUUUGAUUAUUGCAUGCACACAUGUUGUGUGACUAGUAUUUAGGCUAAACAACUAUUAAUUAGAUGA---------- -------------------------------...((((((((((..(((.....(((.(((((....))))).))).....)))..))))))))))((.(((.....))).)).---------- ( -18.00, z-score = -1.93, R) >droWil1.scaffold_181021 38239 118 - 39578 ----CAAUCCCAAGGGAUUAAUAACUGAAAAGUAGAGGGUUUACAAAAUGUAA--GUUAUUUUUUAAUAAACUUUGAUGAGAUUACUUAAUUUUCUUAAAAGGUAAUAAGUUGAGAUUGGAUAA ----.(((((....)))))..((((((((((((((....(((((.....))))--)))))))))).....(((((..(((((...........))))).)))))....)))))........... ( -18.20, z-score = 0.01, R) >consensus ____CAAUCUCAAACAACAGCUA_______AGUGUUUGGCUUAAUAACUUUGAUGAUUGCAUGCACACAUGUUGUGUGACUACUAUUUAGGCUAAACAAUCAUUAAUUAGCUGA__________ ................................((((((((((((..............(((((....)))))..............)))))))))))).......................... (-11.49 = -11.52 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:24 2011