| Sequence ID | dm3.chrX |
|---|---|
| Location | 759,339 – 759,437 |
| Length | 98 |
| Max. P | 0.547947 |
| Location | 759,339 – 759,437 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.51310 |
| G+C content | 0.40137 |
| Mean single sequence MFE | -19.87 |
| Consensus MFE | -9.23 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 759339 98 - 22422827 -------CCCUGUC----CCUCUCUCCUUCCGGCUUUUGG---CUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA -------.......----.............(((..(((.---...)))...(-(((((((.((((((((.....))))))..))))))))))....)))............. ( -18.30, z-score = -1.95, R) >droSim1.chrX_random 820135 98 - 5698898 -------CCCUGCC----CCUCUCUCCUUCCGGCUUUUGG---CUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA -------....(((----.............)))...(((---(...(((..(-(((((((.((((((((.....))))))..))))))))))))).))))............ ( -19.12, z-score = -2.17, R) >droSec1.super_10 596278 98 - 3036183 -------CCCUGCC----CCUCUCUCCUUCCGGCUUUUGG---CUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA -------....(((----.............)))...(((---(...(((..(-(((((((.((((((((.....))))))..))))))))))))).))))............ ( -19.12, z-score = -2.17, R) >droYak2.chrX 676530 95 - 21770863 ----------CCCC----CCUCUCUUCAUCCGGCGCUGGG---CUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA ----------....----.......((((..(((((...)---)........(-(((((((.((((((((.....))))))..))))))))))....)))..))))....... ( -20.60, z-score = -1.73, R) >droEre2.scaffold_4644 720983 107 - 2521924 --CCCCGCCCCGCCGCUGCCCCUCGCCCACCAGCUUUUGG---CUUCAAUUCG-UUGUGAUUGCUUUGUACCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA --....(((.....((((............))))....))---)........(-(((((((.((((((((.....))))))..)))))))))).................... ( -20.10, z-score = -1.43, R) >droAna3.scaffold_12929 507210 92 - 3277472 ------------------UUCAGAGCCUCGUACCUUUCCG--GCUUUUGUUCA-UUCUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAAUUUCCAGAUGAUAAAUAA ------------------...((((((............)--)))))...(((-(.(((..(((((((((.....))))))..))).............)))))))....... ( -13.16, z-score = -0.29, R) >dp4.chrXL_group3a 2553743 109 - 2690836 UUCCCUUCCCCUCC----CCUGUGGCCGUUUCGGGGUGGGGGUCUUCGAUUCGAUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUUCCACAUGAUAAAUAA .......((((..(----((((.........)))))..))))..........(.(((((((.((((((((.....))))))..)))))))))).................... ( -27.70, z-score = -0.56, R) >droPer1.super_11 715875 109 + 2846995 UUCCCUUCCCCUCC----CCUGUGGCCGUUUCGGGGUGGGGGUCUUCGAUUCGAUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA ..............----(.((((((((..((((((.......))))))..)).(((((((.((((((((.....))))))..))))))))).....)))))).)........ ( -28.10, z-score = -0.46, R) >droWil1.scaffold_181096 1533524 97 + 12416693 -------CUUUAUC----ACUCCAUUCGCCUGGCUUUUG---CCUUCAAUUCG-UUGUGAUUGCCUUGUAUCGAUUACAAAAUGCAUUACAACA-UUGCCACAUGAUAAAUAA -------.((((((----(............(((....)---))........(-(((((((.((.(((((.....)))))...)))))))))).-........)))))))... ( -22.00, z-score = -3.42, R) >droVir3.scaffold_12726 899491 77 + 2840439 ----------------------------------GGUGCUGGGCUUUAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACA-UUGCCACAUGAUAAAUAA ----------------------------------.(((...(((........(-(((((((.((((((((.....))))))..)))))))))).-..))).)))......... ( -16.90, z-score = -1.07, R) >droGri2.scaffold_15203 11104597 78 + 11997470 -------------------------------GGGGCUAGG--CCUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAA-AAUUGCCACAUGAUAAAUAA -------------------------------(((((...)--))..(((((..-(((((((.((((((((.....))))))..)))))))))-)))))))............. ( -15.70, z-score = -0.67, R) >droMoj3.scaffold_6473 6543131 77 - 16943266 --------------------------------GGGGCUGGG--CUUCAAUUCG-UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACA-UUGCCACAUGAUAAAUAA --------------------------------(((((...)--)))).....(-(((((((.((((((((.....))))))..)))))))))).-.................. ( -17.60, z-score = -1.18, R) >consensus _______CCC__CC____CCUCUCUCCUUCCGGCGUUUGG___CUUCAAUUCG_UUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAA ......................................................(((((((.((((((((.....))))))..)))))))))..................... ( -9.23 = -9.40 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:59 2011