Locus 12527

Sequence ID dm3.chrX
Location 752,304 – 752,405
Length 101
Max. P 0.965105
window17226

overview

Window 6

Location 752,304 – 752,405
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 75.35
Shannon entropy 0.43900
G+C content 0.40943
Mean single sequence MFE -25.12
Consensus MFE -15.50
Energy contribution -16.94
Covariance contribution 1.44
Combinations/Pair 1.25
Mean z-score -2.01
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.75
SVM RNA-class probability 0.965105
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 752304 101 - 22422827
GCCGCAAAAAAGAAUACAAGAUUUACUAAAUCUUGCAUUUAACUAAGGGUAUCUGCUGGGAAGAGAACUCUUU-CGGUCAGAGAAUCUGUAGAUUCGACUGC
...(((.....((((.(((((((.....))))))).))))..(((.((((.((((.(.((((((....)))))-).).))))..)))).))).......))) ( -24.60, z-score =  -1.49, R)
>droSim1.chrX 614052 100 - 17042790
GCGGC-AAAAAGAAUACAGGAUUAACUAAAUCUUGCAUUUUACUAAAGGUAUCUGCUGGGAAGAGAACUCUUU-CGGUCAAAGAAUCUGUAGAUUCGACCAC
.((((-(....((((.(((((((.....))))))).))))(((.....)))..)))))((((((....)))))-)((((...(((((....))))))))).. ( -27.60, z-score =  -3.24, R)
>droSec1.super_10 589042 101 - 3036183
GCGGCAAAAAAGAAUACAGGAUUAACUAAAUCUUGCAUUUUACAAAAGGUAUCUGCUGGGAAGAGAACUCUUU-CGGUCAAAGAAUCUGUAGAUUCGACUAC
.(((((.....((((.(((((((.....))))))).))))(((.....)))..)))))((((((....)))))-)((((...(((((....))))))))).. ( -24.50, z-score =  -2.55, R)
>droYak2.chrX 669548 86 - 21770863
GCGCUGGAAAGGAAUACAA---------------AUACUUUUUCAAGGGUAUCUGCUGGCAAUGGAACUCUUA-CUGUCAGGGAAUCUGCGCAUUCGACCAA
((((((((((((.((....---------------)).)))))))).((((.(((.((((((..((....))..-.))))))))))))))))).......... ( -22.90, z-score =  -1.69, R)
>droEre2.scaffold_4644 714131 102 - 2521924
GCGAUGGAAAAGAAUACCAGAUAGACUGAAUCUUGCAUUUUAUAGAGAGUAUCUGCUGGGAGGGAAACCCCUUACUGUCAGAGAAUCUGUGGAUUCCACUAC
....(((((((((....(((.....)))..))))....((((((((.....(((((.(((.((....)))))....).))))...))))))))))))).... ( -26.00, z-score =  -1.11, R)
>consensus
GCGGCAAAAAAGAAUACAAGAUUAACUAAAUCUUGCAUUUUACAAAGGGUAUCUGCUGGGAAGAGAACUCUUU_CGGUCAGAGAAUCUGUAGAUUCGACUAC
..........(((((.(((((((.....))))))).)))))......(((.(((((((.(((((....))))).))).))))(((((....))))).))).. (-15.50 = -16.94 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:58 2011