| Sequence ID | dm3.chrX |
|---|---|
| Location | 746,801 – 746,900 |
| Length | 99 |
| Max. P | 0.605705 |
| Location | 746,801 – 746,900 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 60.28 |
| Shannon entropy | 0.64400 |
| G+C content | 0.39875 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.68 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 746801 99 + 22422827 GAUCUCAGCGCUUGCGAAUAU-CAGUUGUGACAGUUGUUUUGGUUAAUGCCAAGAUAAGAAUUUCCCUGAAACAUUCUAAUGGAAAGGUUUGCUAUCUUG------------------- .............((((((..-............((((((((((....))))))))))...(((((..((.....))....))))).)))))).......------------------- ( -18.20, z-score = 0.55, R) >droWil1.scaffold_181096 1513793 79 - 12416693 ------GAACGUUGUAAAGAGACUGUUUUGACAAUUUCUGCACUUGACUUUGCAAUUUGCUACCGAUAAAAUCACAUUUA------GCUUU---------------------------- ------....(((((((((.((.(((...((.....)).))).))..)))))))))..((((..(((........)))))------))...---------------------------- ( -10.40, z-score = 0.17, R) >droSim1.chrX 608779 99 + 17042790 GAUCUCAGCCGUUGCGUAUAU-CGGUUGUGACAGUUGUUUUGGCUAAUGCCAAGAUAAGAAGUUCCCGGAAACAUUCUAAUGGAAUGGUUUGCUAUCUUG------------------- ..((.((((((..........-)))))).))...((((((((((....))))))))))(((((..(((....)((((.....))))))...))).))...------------------- ( -27.20, z-score = -1.78, R) >droSec1.super_10 583740 99 + 3036183 GAUCUCGGCCGUUGCAUAUAU-CGGUUGUGACAGUUGUUUUGGCUUAUGCCAAGAUAAGAAGUUCCCUGAAACAUUCUCAUGGAAUGGUUUGCUAUCUUG------------------- (((..(((((((..((.....-....))..))..((((((((((....))))))))))...(((((.(((.......))).))))))).)))..)))...------------------- ( -26.90, z-score = -1.58, R) >droYak2.chrX 663893 112 + 21770863 -----CUGCCGCUGCAGAUAU-CAGUUGCGACAGUUGUUUUGGCUUAUGCCA-GAUAAGAAGUUGUCAGAAACAUUUUCAGGGAAAGGUUUACUAUCUAAGUGUGCUUAUUGCGACUUG -----((((....))))....-.((((((((((..(..((((((....))))-)).....)..))))....((((((....(((.((.....)).))))))))).......)))))).. ( -28.70, z-score = -0.38, R) >consensus GAUCUCAGCCGUUGCAAAUAU_CAGUUGUGACAGUUGUUUUGGCUAAUGCCAAGAUAAGAAGUUCCCAGAAACAUUCUAAUGGAAAGGUUUGCUAUCUUG___________________ ......(((((((((((........)))))))..((((((((((....))))))))))............................))))............................. (-11.64 = -12.68 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:58 2011