| Sequence ID | dm3.chrX |
|---|---|
| Location | 700,848 – 700,949 |
| Length | 101 |
| Max. P | 0.935072 |
| Location | 700,848 – 700,949 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.93 |
| Shannon entropy | 0.37829 |
| G+C content | 0.45076 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -18.76 |
| Energy contribution | -18.52 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 700848 101 + 22422827 CGGCUCCGCGGGUAGUCAGUGACAGUUGAUUUAGUUUCGGAACAAAGAGUAUAGAUGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUUGCGAAAG-- ......((((((((((.((((....((((((((..((((...((((...(((....))).))))...))))..)))))))).)))).))))))))))....-- ( -32.30, z-score = -3.55, R) >droSim1.chrX 574262 101 + 17042790 CGGCUCCGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-- ......((((((((((.((((.((((((((((.(((....)))............((((......))))))))).)))))..)))).))))))))))....-- ( -28.40, z-score = -1.56, R) >droSec1.super_10 551340 92 + 3036183 CGGCUCCGCGGGUAGUCAGUGCCAGUU---------CCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-- ......((((((((((..((.((....---------..)).))...((((.....((((......))))..(((......)))))))))))))))))....-- ( -26.10, z-score = -1.47, R) >droYak2.chrX 630090 103 + 21770863 CGGCUCUGCGGGUAGUCAGUGCUAGUUGAUUUGGUUCCGUAGCAAAAAGUAUUCACUUCAUUUGAAACGAACCCAAAUGAAACGUUCACUAUCCGCAAAAAGC ..(((.((((((((((....((...((.((((((...(((..((((((((....))))..))))..)))...)))))).))..))..))))))))))...))) ( -29.50, z-score = -2.69, R) >droEre2.scaffold_4644 670742 103 + 2521924 CGGCUCUGCGGCUAGUCAGUGCUAGUUGAUUUGGUUCCGUGGGGAAAAGUAUUCUCGUAGUUUGAUAUGAACUUUAGUGAAACUCUCACUAUCCGCAAAAAGC (((..((.((((((((....))))))))....))..)))((.((((((((....(((((......))))))))))(((((.....))))).))).))...... ( -26.30, z-score = -0.67, R) >consensus CGGCUCCGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUCGCGAAAG__ ......((((((((((.((((....((.((((((...((...((((..(......)....))))...))...)))))).)).)))).))))))))))...... (-18.76 = -18.52 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:55 2011