| Sequence ID | dm3.chrX |
|---|---|
| Location | 699,819 – 699,934 |
| Length | 115 |
| Max. P | 0.950181 |
| Location | 699,819 – 699,934 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.41492 |
| G+C content | 0.48341 |
| Mean single sequence MFE | -32.55 |
| Consensus MFE | -17.81 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 699819 115 + 22422827 AUCCGCAUCCUGUGUACAACACACGCAUACAAAAAGCAAACUC----CACAUUACAGCAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCUUUGCGGGAAAGCCCGGAAAC .(((((.....((((.....))))........(((((....((----(.((((((((((.(((....))).)....)))))))...))))).....)))))))(((....))))))... ( -33.80, z-score = -2.38, R) >droEre2.scaffold_4644 669742 94 + 2521924 --------------------UUCCGUAAUCCGUGAAUAUACCU----CAAUUUACGGCGGAGCGAAAGCUGUCAAAGCUGUAGGCCUAGAAAACUAGCUG-GCGGGAAAGCCCGGAAAU --------------------(((((......((((((......----..))))))((((((((....))).))....((((.(((.(((....)))))).-))))....)))))))).. ( -28.70, z-score = -1.39, R) >droSec1.super_10 550305 114 + 3036183 AUCCGCAUCCUGUGUACAACACACGCAUACAGAAAGCAAGCCC----CACAUUACACAAGAGCGCAAGCUGUCAAAGGUGUAGACUUGGGAAAAUAGCUU-GCGGGAAAACCCGGAAAC .(((.....((((((.(.......).))))))...((((((((----((..((((((.(.(((....))).).....))))))...))))......))))-))(((....))))))... ( -36.80, z-score = -3.46, R) >droSim1.chrX 573247 118 + 17042790 AUCCGCAUCCUGUGUACAACACACGCAUACAAAAAGCAAGCACAUUACACAUUACACAAGAGCGCAAGCUGUGAAAGCUGUAGACUUGGGAAAAUAGCUU-GCGGGAAACCCCGGAAAC .(((((....((((.....)))).)).........((((((...(((((..((.((((...((....)))))).))..))))).(....)......))))-))(((....))))))... ( -30.90, z-score = -1.90, R) >consensus AUCCGCAUCCUGUGUACAACACACGCAUACAAAAAGCAAACCC____CACAUUACACAAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCUU_GCGGGAAAGCCCGGAAAC .......((((.............((.........))..............((((((((.(((....))).)....)))))))....))))...........((((....))))..... (-17.81 = -18.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:54 2011