| Sequence ID | dm3.chrX |
|---|---|
| Location | 685,103 – 685,221 |
| Length | 118 |
| Max. P | 0.818864 |
| Location | 685,103 – 685,221 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.53 |
| Shannon entropy | 0.48049 |
| G+C content | 0.42415 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -14.19 |
| Energy contribution | -15.50 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 685103 118 + 22422827 GGAAUCAUAGGCGAAGUUCCCACU--AAAUCUGUGGAAAUCCAGAAAGCGGAUUCUGUCGAAAAUGCUUGACCAUUCGCCAUUAGCCGAAUGUGAUUUAUCAUUAGAUGGCACAUUCUUG ((.......((((((....((((.--......)))).(((((.......)))))..(((((......)))))..)))))).....))(((((((...((((....)))).)))))))... ( -32.30, z-score = -1.79, R) >droEre2.scaffold_4644 655223 111 + 2521924 ----ACGGGGGCAAAAUCAAAAAC-AAAAUCUGUAAGAACCCAGAUUACUGAUUCCGUCGAAAAACACUGACCAAUCGCUUU----AGGAUGUGAUUUAUCAUUAGAUGGCACAUUCUUG ----...(((((............-..((((((........))))))...((((..((((........)))).)))))))))----((((((((...((((....)))).)))))))).. ( -23.00, z-score = -1.02, R) >droYak2.chrX 608885 106 + 21770863 ----------UCAGGAACAUAAGCCAAAAUCUGUAGAAACCCAGAUCGCUGUUUCCGGCGAAAAACCCUGACCAAUCGCCUU----AGGAUGUGAUUUAUCAUUAGAUGGCACGUUCUUG ----------.(((((((....((((...((((........))))((((((....)))))).......(((..((((((...----.....))))))..))).....))))..))))))) ( -27.60, z-score = -2.14, R) >droSec1.super_10 535426 95 + 3036183 -------------------CCACU--AAAUCUGUGGAAUUCCAGAAAGCGGAUUCUGUGGAAAAAGCUUGACCAUUCGCCCU----CGAAUGUGAUUUAUCGUUAGAUGGCACAUUCCUG -------------------((((.--.(((((((((....)).....)))))))..))))......................----.(((((((...((((....)))).)))))))... ( -24.40, z-score = -1.52, R) >consensus __________GCAAAAUCACAACC__AAAUCUGUAGAAACCCAGAAAGCGGAUUCCGUCGAAAAACCCUGACCAAUCGCCUU____AGAAUGUGAUUUAUCAUUAGAUGGCACAUUCUUG .............................((((........))))..((((((...(((((......))))).))))))........(((((((...((((....)))).)))))))... (-14.19 = -15.50 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:52 2011