| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,467,947 – 9,468,029 |
| Length | 82 |
| Max. P | 0.772395 |
| Location | 9,467,947 – 9,468,029 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 87.42 |
| Shannon entropy | 0.24318 |
| G+C content | 0.41760 |
| Mean single sequence MFE | -17.26 |
| Consensus MFE | -8.95 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9467947 82 - 23011544 UUUAUCCACUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACAUCAUAUCACAUUAUAUCGUGGGCGGUAUCUUCAA .................(((((((.((((.......(((((((......))))))).........))))..))))))).... ( -15.59, z-score = -2.27, R) >droSim1.chr2L 9244497 81 - 22036055 UUUAUCCGCUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACACCAUAUCACAUUAUAUCGUGGGC-GUAUCUUCAA ..((((((........))))))............(..((((((((.(((.((((......)))).))))))-)))))..).. ( -19.80, z-score = -4.06, R) >droSec1.super_3 4922050 81 - 7220098 UUUAUCCGCUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACACCAUAUCACAUUAUAUCGUGGGC-GUAUCUUCAA ..((((((........))))))............(..((((((((.(((.((((......)))).))))))-)))))..).. ( -19.80, z-score = -4.06, R) >droYak2.chr2L 12142025 81 - 22324452 UUCAGCCGCUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACACCAUAUCACAUUAUAUCGUGGGC-GUAUCUGCAA .....(((........)))...............((.((((((((.(((.((((......)))).))))))-))))).)).. ( -19.30, z-score = -2.39, R) >droEre2.scaffold_4929 10077750 81 - 26641161 UUUAUCCACUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACACCAUAUCACAUUAUAUCGUGGGC-GUAUCUGCAA ..(((((..........)))))............((.((((((((.(((.((((......)))).))))))-))))).)).. ( -20.80, z-score = -4.09, R) >dp4.chr4_group1 4450681 78 + 5278887 UUUUCCCGCCUCAUUC---AUAACCAUUCACCUCACUGGCCUGUCACACCAUAUCGCAUUAUAUCA-GGGCCAUAUCUUGAA ................---.......((((......((((((........................-)))))).....)))) ( -8.26, z-score = 0.22, R) >consensus UUUAUCCGCUUUAUCUCGGAUAUCAUCACACCUCGCUGAUAUGUCACACCAUAUCACAUUAUAUCGUGGGC_GUAUCUUCAA .................((((((..((((.......(((((((......))))))).........))))...)))))).... ( -8.95 = -9.87 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:24 2011