| Sequence ID | dm3.chrX |
|---|---|
| Location | 684,492 – 684,600 |
| Length | 108 |
| Max. P | 0.865596 |
| Location | 684,492 – 684,600 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 63.41 |
| Shannon entropy | 0.64357 |
| G+C content | 0.53843 |
| Mean single sequence MFE | -37.50 |
| Consensus MFE | -15.66 |
| Energy contribution | -17.54 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 684492 108 - 22422827 UACCGAUCUGUACAGCAUUUCAGAAUUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACAAAUCCAGGGGCUGUGUGGCCAAAGGGAUUGACA--------- ...((((((.(....((((((.((.(((((((.((....))))))))).))))))))((((...(((....)))..))))...((((....))))..).))))))...--------- ( -32.80, z-score = -0.79, R) >droAna3.scaffold_13117 1019851 101 - 5790199 UGCGGAUGUGUGCGGCAUUCGAGA----GGAGAUCGGACGGCCAGAGGCUCUCAGCAAGGGGGGCCUCAGCCAUGGACCCAUGGACC---UGGCCAGUGGUAUCAAUA--------- ....((((.((.(((..(((....----)))..))).))((((((((((((((......)))))))))..(((((....)))))...---))))).....))))....--------- ( -44.20, z-score = -1.84, R) >droEre2.scaffold_4644 654688 98 - 2521924 ------UGUGUUCAACAUUUCAGAACUGAGAGCCCGAGAGGUCUUCGGAUCGGAAUGGAAUCUAGUCGGGUGAUGAGAGCAGAGGCUGUGUUGCCAAAGGGAUG------------- ------(.(((((....(((((....)))))((((((..((((....))))(((......)))..)))))).....))))).)(((......))).........------------- ( -30.00, z-score = -0.98, R) >droYak2.chrX 608263 117 - 21770863 UGCCGAUGUGUACAGCAUUUCAGAAUCGAGAGUCCGAGAGGCUUUCGGAUCGGCAUGGGAUCUGGUCGGACGACGAGGCCAGAGGCUGUGUGGCCAAAGGGAUUGAUCAUCGGCCGA ((((((.(((.....))).)).((.(((((((.((....))))))))).)))))).....(((((((.........)))))))(((((.(((..(((.....)))..)))))))).. ( -46.40, z-score = -1.86, R) >droSim1.chrX 561094 109 - 17042790 --------UGUACAGCAUUUUAGAAAUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACAAGUCCAGAGGCUGUGUGGCCAAAGGGAUUGAUCAGCCGACAA --------.......((((((.((..((((((.((....))))))))..)))))))).......((((.((((..(((((...((((....))))....)))))..)).)))))).. ( -34.10, z-score = -1.78, R) >consensus U_C_GAUGUGUACAGCAUUUCAGAAUUGAGAGUCCGAGAGGUUUUCGGAUCGGAAUGGGAUCUAGUCGAGCGACGAGUCCAGAGGCUGUGUGGCCAAAGGGAUUGAUA_________ ...............((((((.((.(((((((.((....))))))))).)))))))).(((((.(((....))).........(((......)))....)))))............. (-15.66 = -17.54 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:51 2011