| Sequence ID | dm3.chrX |
|---|---|
| Location | 665,663 – 665,754 |
| Length | 91 |
| Max. P | 0.875656 |
| Location | 665,663 – 665,754 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.40 |
| Shannon entropy | 0.26642 |
| G+C content | 0.54694 |
| Mean single sequence MFE | -32.88 |
| Consensus MFE | -25.61 |
| Energy contribution | -25.93 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 665663 91 + 22422827 -----GGAAAAGCAGGCAGAAUGGGCAGGCCAUUUGGUGGUAA-------GAACAGGCACAAAAGACGCUAGUGGCUUGGGGAGACCUGAGCGAUUGUGCAGA -----..........((....((..(..(((((...)))))..-------)..)).)).........((((((.(((..((....))..))).)))).))... ( -29.20, z-score = -2.36, R) >droSim1.chrX_random 798226 98 + 5698898 -----GGAAAAGCCGGCAGAAUCGGCAGGCCAUUUGGUGGAAAUCUCGAAGAACAGGCACAGAACACGCUAGUGGAUUGGGGAGACCUGAGCGAUUGUGCCGA -----........(((((.(((((.((((((((...))))...((((.((..((.(((.........))).))...)).))))..))))..))))).))))). ( -33.40, z-score = -2.02, R) >droSec1.super_10 515538 98 + 3036183 -----GGAAAAGCCGGCAGAAUCGGCAGGCCAUUUGGUGGAAAUCUCGAAGAACAGGCACAGAAGACGCUAGUGGAUUGGGGAGACCUGAGCGAUUGUGCCGA -----........(((((.(((((.((((((((...))))...((((.((..((.(((.........))).))...)).))))..))))..))))).))))). ( -33.40, z-score = -2.08, R) >droYak2.chrX 589971 103 + 21770863 GGAAAUGGGCAGUCGGCAGAAUGGGCAGGCCAUUUAGUGGAAAUCUCAAAGAACGGCCACAAAAGAUGCCAGUGGUCUGGGGAGACCUGUGCGAUUGUGCCGG .....(((((((((((((((((((.....)))))).((((...((.....))....))))......))))....((..(((....)))..)))))))).))). ( -34.40, z-score = -1.01, R) >droEre2.scaffold_4644 631039 98 + 2521924 -----GGAAAAGUCGGCAGAAUGGGCAGGCCAUUUAGUGGAAAUCCCGAAGAACAGCCACAAAAGAUGCUAGUGGUCUGGGGAGACCUGUGCGAUUGUGCCGG -----........(((((.((((.(((((((((...))))...((((......(((((((...........)))).)))))))..))))).).))).))))). ( -34.00, z-score = -1.95, R) >consensus _____GGAAAAGCCGGCAGAAUGGGCAGGCCAUUUGGUGGAAAUCUCGAAGAACAGGCACAAAAGACGCUAGUGGAUUGGGGAGACCUGAGCGAUUGUGCCGA .............(((((.(((.(.(((((((((.((((...........................)))))))))))))((....))....).))).))))). (-25.61 = -25.93 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:50 2011