| Sequence ID | dm3.chrX |
|---|---|
| Location | 662,492 – 662,676 |
| Length | 184 |
| Max. P | 0.964136 |
| Location | 662,492 – 662,676 |
|---|---|
| Length | 184 |
| Sequences | 3 |
| Columns | 188 |
| Reading direction | forward |
| Mean pairwise identity | 89.01 |
| Shannon entropy | 0.14654 |
| G+C content | 0.49073 |
| Mean single sequence MFE | -56.40 |
| Consensus MFE | -43.41 |
| Energy contribution | -43.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 662492 184 + 22422827 GUGGACAUCUUACACGAAAGCAAAUAGCUACAAAGGCCCAACCAAGGAAGGAAUAAUAGCACAUUUACCAUGCUUUCUCCUCAUUGCACUGGAC----CUAUUCGGUUGGGCCUAGACACUUGCUCACCACGACUUCCGAUAUCCGUCCAAAUGGCCCGAAUGGAUGGAUGUCGGACUAUUUUCCGCC (((((.............(((((....((....((((((((((..((((((..(((........)))((((((............))).))).)----)).)))))))))))))))....)))))..........(((((((((((((((...........)))))))))))))))......))))). ( -60.70, z-score = -3.98, R) >droSim1.chrX_random 794787 170 + 5698898 GUGG-----UGACACGAAAGCAAAUGGCUAUAAAGGCCUAACCAUGGAAGGAAUAAUAGGACAUUUACC---------CCUCAUUGCACUGGAC----CUAUUCGGUUGGGCCUAGACACUUGAUCACCACGACUUCCGAUAUCCGGCCAAAUGGCCCGAAUGGAUGGAUGACGGACUAUUUGCCGCC (((.-----...)))....((((((((......((((((((((..((((((.....(((..((......---------......))..)))..)----)).))))))))))))).....................((((.(((((((((....))))(.....)..))))).)))))))))))).... ( -53.10, z-score = -2.03, R) >droSec1.super_10 512342 174 + 3036183 GUGG-----UGACACGAAAGCAAAUGGCUAUAAAGGCCUAACCAUGGAAGGAAUAAUAGGACAUUUACC---------CCUCAUUGCACUGGAUUGCACUAUUCGGUUGGGCCUAGACACUUGAUCACAACGACUUCCGAUAUCCGGCCAAAUGGCCCGAAUGGAUGGAUGACGGACUAUUUGCCGCC (((.-----...)))....((((((((......((((((((((((((.(((..(((........)))..---------)))...((((......))))))))..)))))))))).....................((((.(((((((((....))))(.....)..))))).)))))))))))).... ( -55.40, z-score = -2.53, R) >consensus GUGG_____UGACACGAAAGCAAAUGGCUAUAAAGGCCUAACCAUGGAAGGAAUAAUAGGACAUUUACC_________CCUCAUUGCACUGGAC____CUAUUCGGUUGGGCCUAGACACUUGAUCACCACGACUUCCGAUAUCCGGCCAAAUGGCCCGAAUGGAUGGAUGACGGACUAUUUGCCGCC (((.........)))....((((((((......((((((((((..((...((((........)))).)).........((..........))............)))))))))).....................((((.((((((.(((...........))).)))))).)))))))))))).... (-43.41 = -43.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:49 2011