| Sequence ID | dm3.chrX |
|---|---|
| Location | 653,152 – 653,270 |
| Length | 118 |
| Max. P | 0.999170 |
| Location | 653,152 – 653,270 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.63 |
| Shannon entropy | 0.38166 |
| G+C content | 0.47358 |
| Mean single sequence MFE | -37.59 |
| Consensus MFE | -23.89 |
| Energy contribution | -22.65 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.37 |
| Mean z-score | -3.64 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.69 |
| SVM RNA-class probability | 0.999170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 653152 118 - 22422827 UGUUUGCCUGGUGUCCAGCCACUGA-UAUUCACAAAUUUCUGACAAAAUUUACGUCGGACGGAGAACAUUUUUCCCAGUCAAAAUGACAACUGU-CGGGUCCCAGACACUAGGCCAACAG ((((.((((((((((..(((((((.-............((((((.........)))))).(((((.....))))))))).....((((....))-)))))....)))))))))).)))). ( -39.50, z-score = -3.84, R) >droSim1.chrX 539835 108 - 17042790 UGUUCGCCUGGUGUUUAGCCACUGAGAAUUCACAAAUUUCUGAUGA----------GGCCAGGCAACAUUUUUCCCAGUC-AAGUGACAACUUU-CGGUUCCCAGCCACUAGGCCAACAG ((((.(((((((((((.(((.((.((((.........)))).).).----------))).)))).............(((-....)))......-.(((.....)))))))))).)))). ( -28.80, z-score = -1.22, R) >droSec1.super_10 502713 108 - 3036183 UGUUCGCCUGGUGUUUAGCCACUGAGAAUUCACAAAUUUCUGAUGA----------GGCCAGGCAACAUUUUUCCCAGUC-AAGUGAUAACUUU-CGGUUCCCAGACACUAGGCCAACAG ((((.(((((((((((.(..(((((((..((((......(((..((----------((...(....)...)))).)))..-..))))....)))-))))..).))))))))))).)))). ( -34.00, z-score = -3.06, R) >droYak2.chrX 579451 117 - 21770863 UGUUCGCCUGGUGUUGAAUCACCGAGAAUCCACAAAUCUCGCUCAAAAUUU---CCGACCCGGCAUCAUUUUUCCCAGUCAGAUUGCCACGUUUUGGGGUCUCAGAUACCAGGCGAACAG (((((((((((((((((.....(((((.........)))))..........---..(((((((((((..............)).)))).(.....))))))))).)))))))))))))). ( -42.64, z-score = -4.64, R) >droEre2.scaffold_4644 618208 117 - 2521924 UGUUCGCCUGGUGUUGAGCCACUGAGAAUUCACAAUUCUCGCACAAAAUUU---CCGAUGCGACAUAAUUUUUCCCAGUCAAAUUGACAACUUUCCGGGUGCCAGACACCAGGCGAACAG (((((((((((((((..((..(((.(((..........((((((.......---..).)))))..............(((.....)))....))))))..))..))))))))))))))). ( -43.00, z-score = -5.46, R) >consensus UGUUCGCCUGGUGUUGAGCCACUGAGAAUUCACAAAUUUCUGACAAAAUUU____CGGCCAGGCAACAUUUUUCCCAGUCAAAGUGACAACUUU_CGGGUCCCAGACACUAGGCCAACAG ((((.((((((((((......(((.(((..........((((.................))))..............(((.....)))...))).)))......)))))))))).)))). (-23.89 = -22.65 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:45 2011