| Sequence ID | dm3.chrX |
|---|---|
| Location | 648,268 – 648,318 |
| Length | 50 |
| Max. P | 0.930034 |
| Location | 648,268 – 648,318 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.05510 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -14.13 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.13 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 648268 50 + 22422827 GUCUCGGGAAGAGCAUCGCAGUGGUAGUGCUUUUUCGGGUAUUCUUCUGA ...((.((((((((((..(....)..)))))))))).))........... ( -15.00, z-score = -1.72, R) >droSec1.super_10 497824 50 + 3036183 GUCUCGGAAAGAGCAUCGCAGUGGAAGUGCUUUUUCGGGUAUUCUUCUGG ...((.((((((((((..(....)..)))))))))).))........... ( -13.70, z-score = -1.23, R) >droSim1.chrX 534873 50 + 17042790 GUCUCGGAAAGAGCAUCGCAGUGGAAGUGCUUUUUCGGGUAUUCUUCUGG ...((.((((((((((..(....)..)))))))))).))........... ( -13.70, z-score = -1.23, R) >consensus GUCUCGGAAAGAGCAUCGCAGUGGAAGUGCUUUUUCGGGUAUUCUUCUGG ...((.((((((((((..(....)..)))))))))).))........... (-14.35 = -14.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:42 2011