| Sequence ID | dm3.chrX |
|---|---|
| Location | 619,127 – 619,235 |
| Length | 108 |
| Max. P | 0.533637 |
| Location | 619,127 – 619,235 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.29 |
| Shannon entropy | 0.28003 |
| G+C content | 0.36789 |
| Mean single sequence MFE | -20.92 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 619127 108 - 22422827 UUUAAGUAAACACAA-----UAUUCUUGAUGCUUCCUAUUCCUAUCAGUUUGCGUCAAUUUGGUCUCGACUUUUUCCUGGUUCUCGA-UUCCAGGAAUACUUUGUGUGCCGAUG ...............-----.....(((((((...................))))))).((((((.(((....(((((((.......-..)))))))....))).).))))).. ( -22.31, z-score = -1.69, R) >droSim1.chrX 505911 107 - 17042790 UUUAAGCAUACACUAUUGUGUAUUCUUGAUGUU------UCCUAUCAGUUCGCGUCAAUUUUUUCUCGACUUUUUCCUGGUCCUCGA-UUCCAGGAAUAUUUUAUGUGCGGAUG .(((((.((((((....)))))).)))))....------........(((((((((...........)))...(((((((.......-..)))))))..........)))))). ( -27.90, z-score = -4.01, R) >droSec1.super_10 468480 103 - 3036183 UUUAAGUAUACACAA-----UAUUCUUGAUGUU------UCCUAUCAGUUUGCGUCAAUUUUUUCUCGACUUUUUCCUGGUCCUCGAGGAAAAGGAAUACUUUAUGUGCGAAUG .....(((((.....-----((((((((((((.------..(.....)...)))))))(((((((((((((.......))))...)))))))))))))).....)))))..... ( -20.80, z-score = -1.34, R) >droEre2.scaffold_4644 583467 104 - 2521924 UUUAAGUAAACACAA-----UGUUCUUGAUGCUUUC---UCCUAUCAGUUUGCAUCAAUUU-UCCCCGACUUUUUCUUGGUUCUCAA-UUCCAGAAAUACUUUGUAUGCCGAUG .....(((.(((...-----.....(((((((...(---(......))...)))))))...-..........(((((.((.......-..))))))).....))).)))..... ( -14.40, z-score = -0.76, R) >droYak2.chrX 543846 105 - 21770863 UUUAAGUAAACACAA-----UAUUCUUGAUGCUUUC---UCCUAUCGGUUUGCAUCAAUUUCUUCUCGACUUUUUCUCGGUUCUCAA-UUCCAGGAAUACUUUGUGUGCCGAUG .........((((((-----((((((((((((....---.((....))...))))).........((((.......)))).......-....)))))))..))))))....... ( -19.20, z-score = -1.86, R) >consensus UUUAAGUAAACACAA_____UAUUCUUGAUGCUU_C___UCCUAUCAGUUUGCGUCAAUUUUUUCUCGACUUUUUCCUGGUUCUCGA_UUCCAGGAAUACUUUGUGUGCCGAUG .....((..((((((..........(((((((...................)))))))...............(((((((..........)))))))....))))))))..... (-12.87 = -13.59 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:36 2011