| Sequence ID | dm3.chrX |
|---|---|
| Location | 611,704 – 611,800 |
| Length | 96 |
| Max. P | 0.633893 |
| Location | 611,704 – 611,800 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 57.19 |
| Shannon entropy | 0.72161 |
| G+C content | 0.35647 |
| Mean single sequence MFE | -25.01 |
| Consensus MFE | -6.46 |
| Energy contribution | -2.83 |
| Covariance contribution | -3.63 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 611704 96 - 22422827 ------------GGUAUAUACAGACGUA---AAUUUUAUAUAUGUAUUCCCGGAGUGGAAUAUAUGAACAUAAAAUUGGAAA-ACUG-----AUAAGAUAUGAUGAGCUUAUUUCUU ------------........(((.....---((((((((.((((((((((......))))))))))...)))))))).....-.)))-----..((((.((((.....)))).)))) ( -16.70, z-score = -1.01, R) >droEre2.scaffold_4644 574728 98 - 2521924 ----------AGAGGGUACACAGUGUUA----UUUAUACUUGUAUAUUCCCGGAGUGGAGUAUAUGAAUAUGAAAUUGAAAACAAUA-----CUAAGAUUUGUUGCGCUUAUUUUUU ----------.(((.(((((.(((.(((----((((((.(..((((((((......))))))))..).))))))((((....)))).-----.))).))))).))).)))....... ( -20.80, z-score = -1.60, R) >droSec1.super_10 460083 100 - 3036183 --------AGAGGAUAUAUACAGAGGUA---UUUUUUAUAUAUGUAUUCCCGGAGGGGAAUAUAUAUACAUAAAAUUGGAAA-AAUA-----CUAAGAUUUGAUGAGCUUCUUUCUU --------(((((...(((.((((((((---((((((.(((((((((((((....)))))))))))))((......))))))-))))-----))....)))))))..)))))..... ( -28.00, z-score = -4.08, R) >droSim1.chrX 497071 100 - 17042790 --------AGAGGAUAUAUACAGAGGUA---UUUUUUAUAUAUGUAUUCCCGGAGUGGAAUAUAUAUACAUAAAAUUGGGAA-AAUA-----CUAAGAUUUGAUGAGCUUCUUUCUU --------(((((...(((.((((((((---((((((.((((((((((((......))))))))))))((......))))))-))))-----))....)))))))..)))))..... ( -23.70, z-score = -2.46, R) >dp4.chrXL_group1e 100053 117 - 12523060 AGGGAUAGAAACGGUAUGUCCAAGGAGAGGGAGAUGGAUGGAUGUACAUAUGUGGUGGAAGAGGGAGAAAAGAAGCGGGUGUCACUGCAAGCCCAGAGGAUGUUCCACCAACCACUU .((..........(((((((((................))))))))).....((((((((.(............((((......))))...((....)).).)))))))).)).... ( -30.19, z-score = -0.62, R) >droPer1.super_60 167922 117 + 401158 AGGGAUAGAAACAGUAUGUCCAAGGAGAGGGAGAUGGAUGGAUGUACAUAUGUGGUGGAAGAGGGAGAAAAGAAGCGGGUGUCACUGCAAACCCAGAGGAUGUUCCACCAACCACUU .((..........(((((((((................))))))))).....((((((((.(............((((......))))...((....)).).)))))))).)).... ( -30.69, z-score = -0.95, R) >consensus ________A_AGGGUAUAUACAGAGGUA___AUUUUUAUAUAUGUAUUCCCGGAGUGGAAUAUAUAAACAUAAAAUUGGAAA_AAUA_____CUAAGAUAUGAUGAGCUUAUUUCUU .............(((((((....................)))))))....(((((((..(((.......................................)))..)).))))).. ( -6.46 = -2.83 + -3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:36 2011