| Sequence ID | dm3.chrX |
|---|---|
| Location | 604,251 – 604,351 |
| Length | 100 |
| Max. P | 0.898727 |
| Location | 604,251 – 604,351 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.87 |
| Shannon entropy | 0.24598 |
| G+C content | 0.40122 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.66 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 604251 100 - 22422827 AACGAACACUUUACAAAUGCAUAUGCACACAUAUG----UACAUACAUACUCGUAUGUGGCUGAAAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUAU ........((((((....(((((((....))))))----)((((((......))))))..((....))(((.......))).))))))((((....)))).... ( -26.70, z-score = -2.14, R) >droSim1.chrX 489869 96 - 17042790 ----CACACUUAACAAAUGCAUAUGCACACAUAUG----UACAUACAUACUCGUAUGUGGCUGAAAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUUU ----..((((........(((((((....))))))----)((((((......))))))..((....))(((.......)))))))...((((....)))).... ( -23.40, z-score = -0.91, R) >droSec1.super_10 452935 100 - 3036183 ----CACACUUAACAAAUGCAUAUGCACACAUAUGUACAUACAUACAUACUCGUAUGUGGCUGAAAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUUU ----..((((.......((((((((....))))))))..(((((((......))))))).((....))(((.......)))))))...((((....)))).... ( -25.50, z-score = -1.43, R) >droYak2.chrX 529668 96 - 21770863 ----CACACUCUGCAAAUGCAUAUGUAC----AUAAAUGUAUGUACAUAUGAGUAUGUGGCUGAAAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUUU ----..((((.(((.....(((((((((----(((....)))))))))))).........((....)).........))).))))...((((....)))).... ( -31.00, z-score = -3.20, R) >droEre2.scaffold_4644 568006 99 - 2521924 ----CACACUUUACAAAUGCAUAUGUACUUAUGUACAUGUGUGUACAUACGAGUAUGUGGCUG-AAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUUU ----....((((((..((((((((((((....))))))))))))(((((....))))).(((.-...)))............))))))((((....)))).... ( -32.60, z-score = -2.88, R) >consensus ____CACACUUUACAAAUGCAUAUGCACACAUAUG_A__UACAUACAUACUCGUAUGUGGCUGAAAAGGUGAAGGAAGCACAGUGAAGGCAGUGAACUGCAUUU ........((((((...(((.....(((...........(((((((......))))))).((....)))))......)))..))))))((((....)))).... (-21.10 = -20.66 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:33 2011