| Sequence ID | dm3.chrX |
|---|---|
| Location | 601,777 – 601,881 |
| Length | 104 |
| Max. P | 0.711861 |
| Location | 601,777 – 601,881 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.04 |
| Shannon entropy | 0.36823 |
| G+C content | 0.46221 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -18.44 |
| Energy contribution | -20.38 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 601777 104 + 22422827 AAAGGAGUUCCUAGGAGUUAAACGGCAAUUCACAGGAACUCCUCAUUCGCUCAUCGACUUUGGCAGACCACAAAUAAGCUGAGCUGAGCCCAUGCAUAUA-UACG-------------- ..((((((((((..(((((.......)))))..)))))))))).....(((((.(...((((........))))...).)))))...((....)).....-....-------------- ( -29.40, z-score = -2.60, R) >droYak2.chrX 526788 108 + 21770863 ----AGGUUCCAAGCA------CAGCAGUUCACAGGAAUUCUUCAUUGGCUCUUCGACUUUGACAGAC-ACAAAUUAGCUGAGAUAAGCCUAAGCCCCCCAUAUACUUGUAUGUACUCG ----(((((.....(.------(((((((((....))))).....(((..((((((....))).))).-.)))....)))).)...)))))........(((((....)))))...... ( -15.90, z-score = 1.52, R) >droSec1.super_10 450349 105 + 3036183 AAAGGGGUUCCUAGGAGUUAAACGGCAAUUCACAGGAAUUCCUCAUUGGCUCCUCGACUUUGGCAGACAGCAAAUAAGCCGAGCUAAGCCCAUGCAUAUAAUACG-------------- ..((((((((((..(((((.......)))))..))))))))))(((.((((.((((.(((..((.....))....))).))))...)))).)))...........-------------- ( -31.00, z-score = -2.23, R) >droSim1.chrX 486841 105 + 17042790 AGAGGGGUUCCUAGGAGUUAAACGGCAAUUCACAGGAAUUCCUCAUUGGCUCCUCGACUUUGGCAGACAGCAAAUAAGCCGAGCUAAGCCCAUGCAUAUAAUACG-------------- .(((((((((((..(((((.......)))))..)))))))))))...((((.((((.(((..((.....))....))).))))...))))...............-------------- ( -33.60, z-score = -2.75, R) >consensus AAAGGGGUUCCUAGGAGUUAAACGGCAAUUCACAGGAAUUCCUCAUUGGCUCCUCGACUUUGGCAGACAACAAAUAAGCCGAGCUAAGCCCAUGCAUAUAAUACG______________ ..((((((((((..(((((.......)))))..))))))))))..(((((((..(...((((........))))...)..)))))))((....))........................ (-18.44 = -20.38 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:32 2011