| Sequence ID | dm3.chrX |
|---|---|
| Location | 597,788 – 597,901 |
| Length | 113 |
| Max. P | 0.970427 |
| Location | 597,788 – 597,901 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.30884 |
| G+C content | 0.51090 |
| Mean single sequence MFE | -37.60 |
| Consensus MFE | -28.54 |
| Energy contribution | -28.86 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 597788 113 - 22422827 --AAUUCGAGGGAAC----GGCAAAGCAAUAACAAGCGUCUAGCUCACAAGCGUCUGUGAGCGAAGCAUUUUGGCAACAUUGGCGCGAUGGGGAUUCCCCCAGUUCCU-CCCUCUUCGAC --.....((((((..----(((.............(((((..(((((((......))))))).........((....))..)))))..(((((....))))))))..)-)))))...... ( -42.50, z-score = -2.97, R) >droEre2.scaffold_4644 561660 101 - 2521924 CAAAGUCGAGGGAAC-------------------AGCGUCUAGCCCUCAAACGUCUGUGAGAAAAGCAUUUUGGCAACAUUUGCCCAAUGGGGAUUCCCCCAGCUUUCCCCCUCUUCUUC ..(((..(((((.((-------------------(((((...........))).))))....(((((.....((((.....))))...(((((....))))))))))..)))))..))). ( -32.40, z-score = -2.38, R) >droYak2.chrX 523130 120 - 21770863 CGAAUUCGGGGGAAUUCGAGGCAAGGCAUCAAAAAGCGUCUAGCUCGCAAACGUCUGUGAGAAAAGCAUUUUGGCAACAUUUGCGCAAUGGGGAUUCCCCCAGUUUUUCCCCUCUUCGUC ((((...(((((((..(...(((((...((((((.((......((((((......))))))....)).)))))).....)))))....(((((....))))))..)))))))..)))).. ( -40.70, z-score = -2.08, R) >droSec1.super_10 447175 115 - 3036183 CAAAUUCGAGGGAAC----GGCAGAGCAACAACAAGCGUCUAGCUCACAAACGUCUGUGAGAAAAGCAUUUUGGCAACAUUGGCGCAGUGGGGAUUCCCCUAG-UUCCCCUCUCUUCUUC .......((((((((----................(((((...((((((......))))))..........((....))..)))))..(((((....))))))-)).)))))........ ( -35.00, z-score = -1.46, R) >droSim1.chrX 483203 115 - 17042790 CAAAUUCGAGGGAAC----GGCAGAGCAACAACAAGCGUCUAGCUCACAAACGUCUGUGAGAAAAGCAUUUUGGCAACAUUGGCGCAAUGGGGAUUCCCCCAG-UUCCCCUCUCUUCUUC .......((((((((----................(((((...((((((......))))))..........((....))..)))))..(((((....))))))-)).)))))........ ( -37.40, z-score = -2.40, R) >consensus CAAAUUCGAGGGAAC____GGCAAAGCAACAACAAGCGUCUAGCUCACAAACGUCUGUGAGAAAAGCAUUUUGGCAACAUUGGCGCAAUGGGGAUUCCCCCAG_UUCCCCCCUCUUCUUC .......(((((.......................(((((...((((((......))))))..........((....))..)))))..(((((....))))).......)))))...... (-28.54 = -28.86 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:31 2011