Locus 12502

Sequence ID dm3.chrX
Location 592,613 – 592,692
Length 79
Max. P 0.994592
window17193

overview

Window 3

Location 592,613 – 592,692
Length 79
Sequences 4
Columns 89
Reading direction forward
Mean pairwise identity 63.53
Shannon entropy 0.57111
G+C content 0.36478
Mean single sequence MFE -16.62
Consensus MFE -11.34
Energy contribution -11.28
Covariance contribution -0.06
Combinations/Pair 1.47
Mean z-score -1.77
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.71
SVM RNA-class probability 0.994592
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 592613 79 + 22422827
GAUUUCCCAAGCAGAAGCUUAUUUGUUUUUGCACUUUCCAUAUAUGUAUGUACAUUGUGAAAC--AUGUAUUUAACGAGAU--------
.(((((....((((((((......)))))))).......((((((((...(((...)))..))--)))))).....)))))-------- ( -16.70, z-score =  -2.43, R)
>droSec1.super_10 441830 85 + 3036183
GAUUUCCCUGGCAGAAGCUUAUUUGUUUUUGCACUUUCCACAUAUGUAU----AUUGUGAAACUUUUGUAUUCAUCGGGUCAACGAGAU
.(((((((((((((((((......))))))))......((((.......----..))))................)))).....))))) ( -17.10, z-score =  -0.88, R)
>droSim1.chrX_random 783402 85 + 5698898
GAUUUCCCUGGCAGAAGCUUAUUUGUUUUUGCACUUUCCACAUAUGUAU----AUUGUGAAACUUAUGUAUUCAUAGGGUCAACGAGAU
.(((((..((((((((((......))))))))......((((.......----..))))...((((((....))))))..))..))))) ( -18.80, z-score =  -1.45, R)
>triCas2.ChLG2 11596021 80 - 12900155
GCUUUUUCUAGCCACAACGCUUGCUUUAUCGCUUUUUCUCUAUACUUGUUCACACGGCGAAUU--AUCCUUUCGCCGAAUCU-------
(((......)))..........((......))......................(((((((..--.....))))))).....------- ( -13.90, z-score =  -2.31, R)
>consensus
GAUUUCCCUAGCAGAAGCUUAUUUGUUUUUGCACUUUCCACAUAUGUAU____AUUGUGAAAC__AUGUAUUCAUCGAGUCA_______
.....(((..((((((((......)))))))).......................((((((.........))))))))).......... (-11.34 = -11.28 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:31 2011