| Sequence ID | dm3.chrX |
|---|---|
| Location | 591,283 – 591,348 |
| Length | 65 |
| Max. P | 0.680334 |
| Location | 591,283 – 591,348 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 77.19 |
| Shannon entropy | 0.40236 |
| G+C content | 0.43822 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -8.84 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 591283 65 + 22422827 GGGGUUAAGUCGUAGGAUCCGUC---GAUCCUAUUGACAGUCCCUGAAAAAGAAGCGUAAAACAAUAU ((((....(((((((((((....---))))))).))))...))))....................... ( -18.40, z-score = -2.83, R) >droEre2.scaffold_4644 554671 64 + 2521924 -GGGUGAAGUCGUAGGAUCCUUC---UAUCCUGUUGACAGUCCCUAAAAAAGAAGCGUAAAACAAUAU -(((....((((((((((.....---.)))))).))))...)))........................ ( -11.20, z-score = -0.69, R) >droSec1.super_10 440483 65 + 3036183 GCGGUUAAGUCGUAGGAUCCGUC---GAUCCUAUUGACAGUCCCUGAAAAAGAAGCGUAAAACAAUAU (((.((..(((((((((((....---))))))).)))).....((.....)))).))).......... ( -15.70, z-score = -2.44, R) >droSim1.chrX 476422 65 + 17042790 GGGGUUAAGUCGUAGGAUCCGUC---GAUCCUAUUGACAGUCCCUGAAAAAGAAGCGUAAAACAAUAU ((((....(((((((((((....---))))))).))))...))))....................... ( -18.40, z-score = -2.83, R) >droPer1.super_60 135401 67 - 401158 GGGGAUGCGUCUCAAGCCUCGCCCUAAAAUUCAUUAACCCUCGCGGUGGAAGA-GCGCAAAAAAAAAA .....((((.(((...((((((....................)))).))..))-)))))......... ( -13.95, z-score = 0.43, R) >consensus GGGGUUAAGUCGUAGGAUCCGUC___GAUCCUAUUGACAGUCCCUGAAAAAGAAGCGUAAAACAAUAU .(((....(((((((((((.......))))))).))))...)))........................ ( -8.84 = -9.80 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:30 2011