| Sequence ID | dm3.chrX |
|---|---|
| Location | 587,104 – 587,224 |
| Length | 120 |
| Max. P | 0.596085 |
| Location | 587,104 – 587,224 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.83 |
| Shannon entropy | 0.29135 |
| G+C content | 0.47960 |
| Mean single sequence MFE | -37.06 |
| Consensus MFE | -20.49 |
| Energy contribution | -22.50 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 587104 120 + 22422827 CAGCAGUCGAGACAUUUUGAUGUGACUUGCAUACUGAAAAAGUGGUUGAGAUGGGGCAGACCCAUUUAGCAGGUCGACAUUUGUGCUACCCUAUUUGGUACCGGGAGCAUAGGGGCAUAG ..((.(((...((((....))))(((((((.((((.....))))....(((((((.....))))))).)))))))))).((((((((.(((...........))))))))))).)).... ( -41.50, z-score = -2.95, R) >droEre2.scaffold_4644 550477 120 + 2521924 CAGCAGGCGAGUCAUUUUGAUGUGACUUGCAUACUGAAAAAGCUGUUGAGACGGGACAGGCCCAUUUAACAGGUCUACAUUUGUGCUACCCUAGUUAAUACCAAGAGCAUGGAGGCACUG (((...(((((((((......)))))))))...)))......((((((((..(((.....))).))))))))..........(((((.((...(((.........)))..)).))))).. ( -35.30, z-score = -1.42, R) >droYak2.chrX 512111 99 + 21770863 CAGCAGUCGGGACAUUUUGAUGUGACUUGCAUACUGAAAGAGCGCUUGAGAUGGGGUAGGCCCAUGUAGCAGAU-------------ACCCUAUUUAAUACCAAGAGCAUAG-------- ..(((((((.(.(.....).).)))).)))...........((.((((((((((((((.((.......))...)-------------))))))))).....)))).))....-------- ( -26.70, z-score = -1.30, R) >droSec1.super_10 434395 120 + 3036183 CAGCAGUCGAGACAUUUUGAUGUGACUUGCAUACUGAAAAAGCGGUUGAGAUGGGGCAGACCCAUUUAGCAGGUCGACAUUUGUGCUACCCUAUUUUGUACCGGGAGCAUAGGGGCAUAG ..((.(((...((((....))))(((((((..((((......))))..(((((((.....))))))).)))))))))).((((((((.(((...........))))))))))).)).... ( -41.20, z-score = -3.12, R) >droSim1.chrX 472341 120 + 17042790 CAGCAGUCGAGACAUUUUGAUGUGACUUGCAUACUGAAAAAGCGGUUGGGAUGGGGCAGACCCAUUUAGCAGGUCGACAUUUGUGCUACCCUAUUUUGUACCGGGAGCAUGGGGGCAUAG ..((.(((...((((....))))(((((((..((((......))))..(((((((.....))))))).)))))))))).((..((((.(((...........)))))))..)).)).... ( -40.60, z-score = -2.26, R) >consensus CAGCAGUCGAGACAUUUUGAUGUGACUUGCAUACUGAAAAAGCGGUUGAGAUGGGGCAGACCCAUUUAGCAGGUCGACAUUUGUGCUACCCUAUUUAGUACCGGGAGCAUAGGGGCAUAG ..(((.(((((....))))))))(((((((..((((......))))..(((((((.....))))))).)))))))......(((((..((((((..............))))))))))). (-20.49 = -22.50 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:29 2011