| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,463,975 – 9,464,040 |
| Length | 65 |
| Max. P | 0.585963 |
| Location | 9,463,975 – 9,464,040 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.27474 |
| G+C content | 0.30404 |
| Mean single sequence MFE | -6.95 |
| Consensus MFE | -5.78 |
| Energy contribution | -5.65 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9463975 65 - 23011544 UUAUGUGACAAUUAUUUGUGUGGCUUUAUUUAGAUUUUUGUCUCCUCGUCAUAAGGCCUUCUCCU .......((((....))))..((((((((..((((....)))).......))))))))....... ( -10.00, z-score = -1.07, R) >droYak2.chr2L 12137391 61 - 22324452 UAAUGUGAUAAUUAUAUGUGUAUAUUUAUUUAGAUUUUUGUCCCUUCA-CGUAAAGCCUCAA--- ..(((((((((.((((....)))).)))....(((....)))...)))-)))..........--- ( -5.80, z-score = -0.43, R) >droSec1.super_3 4917843 65 - 7220098 UUAUGUGAUAAUUAUUUGUGUGCCUUUAUUUAGAUUUUUGUCUCUUCUUCAUAAAACCUCCUCCG (((((.(((((..(((((.(((....))).)))))..))))).......)))))........... ( -6.00, z-score = -1.91, R) >droSim1.chr2L 9240545 65 - 22036055 UUAUGUGAUAAUUAUUUGUGUGCAUUUAUUUAGAUUUUUGUCUCUUCUUCAUAAAACCUCCUCCG (((((.(((((..(((((.(((....))).)))))..))))).......)))))........... ( -6.00, z-score = -1.35, R) >consensus UUAUGUGAUAAUUAUUUGUGUGCAUUUAUUUAGAUUUUUGUCUCUUCUUCAUAAAACCUCCUCCG ....(.(((((..(((((.(((....))).)))))..))))).)..................... ( -5.78 = -5.65 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:21 2011