| Sequence ID | dm3.chr2L |
|---|---|
| Location | 842,692 – 842,793 |
| Length | 101 |
| Max. P | 0.545961 |
| Location | 842,692 – 842,793 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 67.01 |
| Shannon entropy | 0.55347 |
| G+C content | 0.55637 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -16.07 |
| Energy contribution | -15.96 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 842692 101 + 23011544 GCUCGAAACGCAACUGGCGCCCCACCAGACCGGAUCACAGACCAGAUCAGACCAGCCGGAGAAGUCUGGCGCAAGUGCGUUUCAGACGAAGCGGAAUUCAU------- ....((((((((.((.(((((.....((((..((((........))))...((....))....))))))))).))))))))))....(((......)))..------- ( -32.10, z-score = -1.58, R) >droYak2.chr2L 826321 101 + 22324452 GCUCGGAACCCAACUGUCGCCCCACCAGACCGGA-------CCAGACCACCACAGCCGGAGAAGUCUGGCGCAAAUGCGUUUCAGACAAAGCGGAAUUCGGAAUUCAU ....(((..((.....((((.........((((.-------...(.....)....))))....(((((((((....))))..)))))...)))).....))..))).. ( -25.10, z-score = 0.13, R) >droSim1.chr2L 841567 101 + 22036055 GCUCGGAACGCAACUGGCGCCCCACCAGACCGGACCCCAGACCAGAUCGGACCAGCCGGAGAAGUCUGGCGCAAGUGCGUUUCAGACGAAGCGGAAUUCAU------- ....((((((((.((.(((((...((.....)).....((((....((((.....))))....))))))))).))))))))))....(((......)))..------- ( -32.80, z-score = -0.64, R) >droPer1.super_1 7127407 95 + 10282868 GAUCAGAGCGCGACUGUCGCC--AACAGAUCCAA-CAGAAAUCUGACAGCCCCGUCUG----------GACAAAAUGCGUUUCAGACUAAGCGCGAAAUAAAACGCAU .......(((......((((.--..(((((....-.....)))))...((...(((((----------(((.......).)))))))...)))))).......))).. ( -21.52, z-score = -0.86, R) >dp4.chr4_group3 5636414 101 + 11692001 GAUCAGAGCGCGACUGUCGCC--AACAGAUCCAA-CAGAAAUCUGACAGCCCCGUCUGC----GUCUGGACAAAAUGCGUUUCAGACUAAGCGCGAAAUAAAACGCAU ..(((((.((((((.(..((.--..(((((....-.....)))))...))..)))).))----))))))......(((((((......)))))))............. ( -23.70, z-score = -0.44, R) >consensus GCUCGGAACGCAACUGUCGCCCCACCAGACCGGA_CACAAACCAGACCGCCCCAGCCGGAGAAGUCUGGCGCAAAUGCGUUUCAGACGAAGCGGAAUUCAAAA__CAU ....((((((((.((((.......))))..........................(((((......))))).....))))))))......................... (-16.07 = -15.96 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:08 2011