| Sequence ID | dm3.chrX |
|---|---|
| Location | 586,651 – 586,743 |
| Length | 92 |
| Max. P | 0.751750 |
| Location | 586,651 – 586,743 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Shannon entropy | 0.32055 |
| G+C content | 0.41017 |
| Mean single sequence MFE | -25.81 |
| Consensus MFE | -12.80 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 586651 92 + 22422827 UAUUUUUGUGGCUUCUAAUGAAGCACUC----------UGAUUAACGAAGCCACACUCCUAAGGCACCACCUUUGAGUCUUGAUUACCAAUAUUUAGUGCUA ......(((((((((((((.(.......----------).))))..))))))))).......(((((......(((((.(((.....))).)))))))))). ( -20.60, z-score = -2.08, R) >droEre2.scaffold_4644 550033 102 + 2521924 CAUUUUGGUGGCUUCUAAUGAAGCACGUUAGUGGUCAGUGAUUAACAAUACCACCCCCCGAGGGCACCACCUCUGAAUGUUGAUUACCAAUUUUGAGUGCUG ((..(((((((((((....)))))(((((.(((((..((.....))...))))).....((((......))))..)))))....))))))...))....... ( -27.10, z-score = -1.17, R) >droYak2.chrX 511654 99 + 21770863 UAUUUUUGUGGCUUCUAAUGAAGC-CGUUAGUGGUCGCUGAUUAAUAAUCCCACCCCC-GAAGACAC-ACCUUUGAAUGUUGAUUGCCGAUUUUGAGUGCUA .........((((((....)))))-)..(((((.(((..((((..(((((..((...(-((((....-..)))))...)).)))))..)))).))).))))) ( -22.50, z-score = -2.05, R) >droSec1.super_10 433941 102 + 3036183 UAUUUUUGUGGCUUCUAAUGAAGCACUCUAGUGGUCGCUGAUUAAUGAAGCCACAAUCCUAAGGCACUACCUUUGAAUCUUGAUUACCAAUAUCUAGUGCUA .....((((((((((......((((((.....))).))).......))))))))))......(((((((...(((............)))....))))))). ( -28.12, z-score = -3.08, R) >droSim1.chrX 471886 102 + 17042790 UAUUUUUGUGGCUUCUAAUGAAGCACUCUAGUGGUCGCUGAUUAAUGAAGCCACAAUCCUAAGGCACUACCUUUGAAUCUUGAUUACCAAUAUCUAGUGCCA .....((((((((((......((((((.....))).))).......))))))))))......(((((((...(((............)))....))))))). ( -30.72, z-score = -3.87, R) >consensus UAUUUUUGUGGCUUCUAAUGAAGCACUCUAGUGGUCGCUGAUUAAUGAAGCCACACUCCUAAGGCACCACCUUUGAAUCUUGAUUACCAAUAUUUAGUGCUA ......(((((((((....)))))....((((....))))...........)))).......(((((.....(((............)))......))))). (-12.80 = -13.42 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:28 2011