| Sequence ID | dm3.chrX |
|---|---|
| Location | 585,112 – 585,203 |
| Length | 91 |
| Max. P | 0.630864 |
| Location | 585,112 – 585,203 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 96.24 |
| Shannon entropy | 0.06620 |
| G+C content | 0.41393 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -21.92 |
| Energy contribution | -21.76 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 585112 91 - 22422827 AAUUUGUUAGCCAAAGGCGCUUACUGGCUUAUAAAAUGCCAAUCCAAAAAGCAAGCUUGUUAACGGAAAAUGUGCAGUGGCACAACGAAAG ..((((((.((((...((((....((((.........)))).(((....((((....))))...)))....))))..))))..)))))).. ( -23.80, z-score = -1.34, R) >droSim1.chrX 470339 90 - 17042790 AAUUUGUUAGCCAAAGGCGCUUACUGGCUUAUGAAAUGCCAAUCCAGAAAGCAAGCUUGUUAACGGAAAAUGUGCAGUGGCA-AACGAAAG ..((((((.((((...((((....((((.........)))).(((....((((....))))...)))....))))..)))).-)))))).. ( -25.70, z-score = -1.76, R) >droSec1.super_10 432414 86 - 3036183 AAUUUGUUAGCCAAAGGCGCUUACUGGCUUAUGAAAUGCCAAUCCAGAAAG----CUUGUUAACGGAAAAUGUGCAGUGGCA-AACGAAAG ..((((((.((((...((((....((((.........)))).(((......----.........)))....))))..)))).-)))))).. ( -23.76, z-score = -1.70, R) >droYak2.chrX 510201 90 - 21770863 AAUUUGUUAGCUAAAGGCGCUUACUGGCUUAUGAAAUGCCAAUCCAAAAAGCAAGCUUGUUAACGGAAAAUGUGCAGUGGCA-AACGAAAG ..((((((.((((...((((....((((.........)))).(((....((((....))))...)))....))))..)))).-)))))).. ( -23.40, z-score = -1.26, R) >droEre2.scaffold_4644 548501 90 - 2521924 AAUUUGUUAGCCAAAGGCGCUUACUGGCUUAUGAAAUGCCAAUCCAGAAAGCAAGCUUGUUAACGGAAAAUGUGCAGUGGCA-AACGAAAG ..((((((.((((...((((....((((.........)))).(((....((((....))))...)))....))))..)))).-)))))).. ( -25.70, z-score = -1.76, R) >consensus AAUUUGUUAGCCAAAGGCGCUUACUGGCUUAUGAAAUGCCAAUCCAGAAAGCAAGCUUGUUAACGGAAAAUGUGCAGUGGCA_AACGAAAG ..(((((..((((...((((....((((.........)))).(((...(((....)))......)))....))))..))))...))))).. (-21.92 = -21.76 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:25 2011