| Sequence ID | dm3.chrX |
|---|---|
| Location | 580,048 – 580,104 |
| Length | 56 |
| Max. P | 0.593784 |
| Location | 580,048 – 580,104 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 95.67 |
| Shannon entropy | 0.07335 |
| G+C content | 0.43117 |
| Mean single sequence MFE | -10.73 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.88 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 580048 56 - 22422827 CCCCAAAUUUUGCUCCUCCAGCGCCUUUUAUUUUGGCGCAUGCAUUUUUUAAGUGU ....................(((((.........)))))..(((((.....))))) ( -11.00, z-score = -1.57, R) >droEre2.scaffold_4644 543412 55 - 2521924 -CCCCAAUUUUGCUCCUCCAGCGCCUUUUAUUUUGGAGCAUGCAUUUUUUAAGUGU -.........((((((..................)))))).(((((.....))))) ( -9.47, z-score = -1.02, R) >droYak2.chrX 505307 55 - 21770863 -CCCCAAUUUUGCUCCUCCAGCGCCUUUUAUUUUGGCGCAUGCAUUUUUUAAGUGU -...................(((((.........)))))..(((((.....))))) ( -11.00, z-score = -1.66, R) >droSec1.super_10 427402 55 - 3036183 -CCCCAAUUUUGCUCCUCCAGCGCCUUAUAUUUUGGCGCAAGCAUUUUUUAAGUGU -...................(((((.........)))))..(((((.....))))) ( -11.10, z-score = -1.61, R) >droSim1.chrX 465372 55 - 17042790 -CCCCAAUUUUGCUCCUCCAGCGCCUUAUAUUUUGGCGCAAGCAUUUUUUAAGUGU -...................(((((.........)))))..(((((.....))))) ( -11.10, z-score = -1.61, R) >consensus _CCCCAAUUUUGCUCCUCCAGCGCCUUUUAUUUUGGCGCAUGCAUUUUUUAAGUGU ....................(((((.........)))))..(((((.....))))) ( -9.68 = -9.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:21 2011