| Sequence ID | dm3.chrX |
|---|---|
| Location | 578,145 – 578,213 |
| Length | 68 |
| Max. P | 0.962122 |
| Location | 578,145 – 578,213 |
|---|---|
| Length | 68 |
| Sequences | 9 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 66.01 |
| Shannon entropy | 0.66676 |
| G+C content | 0.31387 |
| Mean single sequence MFE | -8.50 |
| Consensus MFE | -4.40 |
| Energy contribution | -4.96 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 578145 68 - 22422827 --UGACUCUUCAUUAC---AAAUUUUUCAACCCAGCGGCGAAUAAAUAA------AACUUAAUUAUGCCUAAUUGAGUU --..............---..(((((((..((....)).))).))))..------((((((((((....)))))))))) ( -6.30, z-score = -0.19, R) >droSim1.chrX 463207 68 - 17042790 --UGACUCUUCAUUAC---AAAUUUCCCAACCCAGCGGCGAAUAAAUAA------AACUUAAUUAUGCCUAAUUGAGUU --..............---....(((((........)).))).......------((((((((((....)))))))))) ( -8.50, z-score = -1.46, R) >droSec1.super_10 425800 68 - 3036183 --UGACUCUUCAUUAC---AAAUUUCCCAACCCAGCGGCGAAUAAAUAA------AACUUAAUUAUGCCUAAUUGAGUU --..............---....(((((........)).))).......------((((((((((....)))))))))) ( -8.50, z-score = -1.46, R) >droYak2.chrX 499734 71 - 21770863 --UGACUCUUCAUUAUAAUGAAUUUCCCAACCCAGCGGCGAAUAAAUAA------AACUUAAUUAUGCCUAAUUGAGUU --......(((((....))))).(((((........)).))).......------((((((((((....)))))))))) ( -9.90, z-score = -1.65, R) >droEre2.scaffold_4644 540151 68 - 2521924 --UGACUCUUCAUUAU---GAAUUUCCCAACCCAGCGGCGAAUAAAUAA------AACUUAAUUAUGCCUAAUUGAGUU --..........((((---..((((.((........)).))))..))))------((((((((((....)))))))))) ( -9.80, z-score = -1.67, R) >droAna3.scaffold_13117 614065 63 - 5790199 -------UGGCACUUUAUCACAAAUACGAAAUAAAAACGAAUCGAA---------AACUUAAUUAUGCCUAAUUGAGUU -------.......................................---------((((((((((....)))))))))) ( -6.20, z-score = -0.94, R) >dp4.chrXL_group1e 48647 70 - 12523060 --------UUCAUUAAAA-AUGCCCCACAAACAAACGGAUAAAAAAUGGCAACCCAACUUAAUUAUAUCUAAUUGAGUU --------..........-.((((((..........)).........))))....((((((((((....)))))))))) ( -9.10, z-score = -1.70, R) >droPer1.super_60 115807 70 + 401158 --------UUCAUUAAAA-AUGCCCCACAAACAAACGGAUAAAAAAUGGCAACCCAACUUAAUUAUAUCUAAUUGAGUU --------..........-.((((((..........)).........))))....((((((((((....)))))))))) ( -9.10, z-score = -1.70, R) >droGri2.scaffold_15252 7213750 72 + 17193109 UGGUUUUAGACAUUAUGUAAAACAUACCAACCCGUAAAUAAAUAAAUG------CAACUGAAUU-UGUUCAAUUACGCA ((((.....((.....)).......))))...(((((.(.(((((((.------.......)))-)))).).))))).. ( -9.10, z-score = -0.41, R) >consensus __UGACUCUUCAUUAU___AAAUUUCCCAACCCAGCGGCGAAUAAAUAA______AACUUAAUUAUGCCUAAUUGAGUU .......................................................((((((((((....)))))))))) ( -4.40 = -4.96 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:21 2011